BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg940565
Length=1234
Score E
Sequences producing significant alignments: (Bits) Value
AT5G10950.1 | Symbols: | Tudor/PWWP/MBT superfamily protein | ... 874 0.0
> AT5G10950.1 | Symbols: | Tudor/PWWP/MBT superfamily protein
| chr5:3459273-3461734 REVERSE LENGTH=1574
Length=1574
Score = 874 bits (473), Expect = 0.0
Identities = 778/918 (85%), Gaps = 50/918 (5%)
Strand=Plus/Plus
Query 7 TTGCTCTCTCGAAGATGGCTGGTTCTAGGAAGCGTTCATCAGCAAACAACAGAC--G-TT 63
||||| | |||||||||| |||||||||||||||||||||||| || ||||||| | ||
Sbjct 91 TTGCT-T-TCGAAGATGGTTGGTTCTAGGAAGCGTTCATCAGCCAAGAACAGACTTGTTT 148
Query 64 CTTC-T--AGTCGTTCTTCTGGAAAGGATAAGGTTTCTGATGCTCCAAAATATGGTGAAG 120
|||| | | |||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct 149 CTTCTTCAACTCGTTCTTCTGGGAAGGATAAGGTTTCTGATGCTCGTAAATATGGTGAAG 208
Query 121 CCTTGGTGGGTTCAAGGATTA-GAGTTTGGTGGCCGTTAGACCGCAAATTCTACAAGGGT 179
|||||||||||||||||| || |||||||||||||| | ||| |||||||||| ||||||
Sbjct 209 CCTTGGTGGGTTCAAGGA-TACGAGTTTGGTGGCCGATGGACAGCAAATTCTATAAGGGT 267
Query 180 GTGGTGGATTCCTATGTCTCTTCCAAGAAGAAACATCGGGTTTTCTATGAAGATGGTGAT 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 268 GTGGTGGATTCCTATGTCTCTTCCAAGAAGAAACATCGGGTTTTCTATGAAGATGGTGAT 327
Query 240 AAAGAGACCTTGGATTTGAAGAAGGAAAGATGGGAGTTGATTGAAGAAGATGATACTGAA 299
||||||||||||||| |||||||||| ||||||||||||||||||||||||||| |||||
Sbjct 328 AAAGAGACCTTGGATCTGAAGAAGGAGAGATGGGAGTTGATTGAAGAAGATGATGCTGAA 387
Query 300 TCTGAATCTGATGAGATCTCCCTTCAGGATGAATCTGCTGATGAGAGTTCTGAGGGTACT 359
||||||||||||||||||||||| ||||| |||||||||| |||||||||||| || |||
Sbjct 388 TCTGAATCTGATGAGATCTCCCTACAGGAGGAATCTGCTGGTGAGAGTTCTGAAGGCACT 447
Query 360 CCAGAACCGCCTAAAGGGAAAGGGAAGTCATCCTTAAAAGGAAGGACAGATGATGCTATG 419
||||||||||||||||||||||||||| |||| |||||||||||||| ||||| ||||||
Sbjct 448 CCAGAACCGCCTAAAGGGAAAGGGAAGGCATCTTTAAAAGGAAGGACGGATGAAGCTATG 507
Query 420 CCGAAAAAGAGACGGAAGATAGATTCTTCATCAAAGAGCAAATCCAAAGAGGTGGAGAAG 479
|| ||||||| || ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 508 CCCAAAAAGAAACAGAAGATAGATTCTTCATCAAAGAGCAAGGCCAAAGAGGTGGAGAAG 567
Query 480 AAGACCTCGAAGCCTGAAACTGAGAAAAATGGCAAAATGGGTGATATCGG-GGGTAAGAT 538
||| |||| ||||| |||||||||||||||||||||||||||||||| || ||| |||||
Sbjct 568 AAGGCCTCAAAGCCCGAAACTGAGAAAAATGGCAAAATGGGTGATATTGGTGGG-AAGAT 626
Query 539 TGTAGCAGCGGCCTCACGCATGAGTGGAAGATTCCGAAGCAAGGGGAATAACAATGAAAA 598
|||||||||||| ||||||||||||| ||| || || |||||||||||| || ||||
Sbjct 627 TGTAGCAGCGGCATCACGCATGAGTGAAAGGTTTCGGAGCAAGGGGAATGTGGATCAAAA 686
Query 599 AGAGACATCCAAGTCCTTGAAAAAACCGAGGA---CTTC----T--ACCAA-A--ATAG- 645
||||||||| ||| ||| ||||||||| | || |||| | ||||| | | |
Sbjct 687 AGAGACATCAAAGGCCTCGAAAAAACCAAAGATGTCTTCAAAGTTGACCAAGAGGAAACA 746
Query 646 C-C--A--A--AAG--GAA--TG--GCT-CTGATGATGATAATGATGCTTCAAGCGAAGA 691
| | | | ||| ||| || | ||| |||||||| |||| |||| ||||||||
Sbjct 747 CACTGATGACCAAGATGAAGATGAAGAAGCTGGTGATGATATTGATACTTCTAGCGAAGA 806
Query 692 GGCCAAGCCCAAGGCCATGAAGTCCAGCAACTCCAACGCTGATGAAGATGCTGAAAATAA 751
||| ||||| |||| | || ||| |||||||||| |||||||||| ||||||||||
Sbjct 807 GGCGAAGCCTAAGGTGTTAAAATCCTGCAACTCCAATGCTGATGAAGTTGCTGAAAATTC 866
Query 752 TACT-ACTGATGATGAGGC-----TTCGAAAT-CCAGCAACTCTAACACTGACAAAGAGG 804
| || | ||| |||||| | ||| ||| ||| ||||||||| |||| ||||| |
Sbjct 867 TTCTGA-TGAAGATGAGCCCAAGGTTCTAAAAACCAACAACTCTAAGGCTGATAAAGATG 925
Query 805 AAGGGGCTGATGCTGAGAATGAAACTTCTGAAGATGAGGCCGAGCTCAAGGCCTTGAAAC 864
||| | || | ||||||||||| ||||| |||||||| |||| ||||||| |||||
Sbjct 926 AAGATGAAGA-G--GAGAATGAAACATCTGATGATGAGGCTGAGCCCAAGGCCCTGAAAT 982
Query 865 CCAGCAACTCCAACGCTG 882
|||||||||||| |||
Sbjct 983 TGAGCAACTCCAACTCTG 1000
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60642258360
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5