BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg940567
Length=851
Score E
Sequences producing significant alignments: (Bits) Value
AT5G10970.1 | Symbols: | C2H2 and C2HC zinc fingers superfamil... 1221 0.0
> AT5G10970.1 | Symbols: | C2H2 and C2HC zinc fingers superfamily
protein | chr5:3469268-3470086 FORWARD LENGTH=819
Length=819
Score = 1221 bits (661), Expect = 0.0
Identities = 771/822 (94%), Gaps = 15/822 (2%)
Strand=Plus/Plus
Query 22 ATGGAGTCTTCCAGCGGAAAGCCAAGATCATCTGATTCCTCATGCATCGTTTCTGCATCC 81
||||| |||||||||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct 1 ATGGATTCTTCCAGCGGAAAACCAAGATCATCTGATTCCTCATGCATCATTTCTGCATCC 60
Query 82 ACCACTCTTCCATTTCCAGATTCCCCAAAGCTGAGCCTA-AACAATTACAACAGAGACGC 140
|||| ||||| |||| ||||||||||||||||||||||| || |||||||||| |||| |
Sbjct 61 ACCAGTCTTCAATTTTCAGATTCCCCAAAGCTGAGCCTAGAA-AATTACAACATAGACAC 119
Query 141 AGAAGCGGCAC--------GA-GATCATGACCAAATAGAAGGAGAGGAAGGTGTAAGGCT 191
|| ||| |||| || ||||||||||||| |||||||| ||||||| ||| |||
Sbjct 120 AGTAGCAGCACAAGAAGAAGATGATCATGACCAAAAAGAAGGAGTGGAAGGTATAAAGCT 179
Query 192 TGAACTTATGCTAGCAGGATATGATTCTAGTAAACCACAGCTCAATCAAGAACTCAATCT 251
||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 180 TGACCTTATGCTAGCAGGATATGATTCTAGTCAACCACAGCTCAATCAAGAACTCAATCT 239
Query 252 CCTCAACTGCTTAGAGGCAGGTGTAGTCACTCCAAGTTTTAACGGGTCAAGTTCCACTGA 311
|||| ||||||||||| |||||||||||||||| |||||||||||||||| |||||||||
Sbjct 240 CCTCGACTGCTTAGAGACAGGTGTAGTCACTCCGAGTTTTAACGGGTCAACTTCCACTGA 299
Query 312 ACAGAAGCTCTTCTCATGCAACTACTGTCAAAGAACATTCTACAGCTCACAGGCGCTTGG 371
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 ACAGAAGCTCTTCTCATGCAACTACTGTCAAAGAACATTCTACAGCTCACAGGCGCTTGG 359
Query 372 TGGTCACCAAAACGCCCACAAAAGAGAAAGGACTTTGGCAAAGCGAGGGCAACGGATGGC 431
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 TGGTCACCAAAACGCCCACAAAAGAGAAAGGACTTTGGCAAAGCGAGGGCAACGGATGGC 419
Query 432 ATCTGCCGCAGCTTTCGGGCATCCATATAGCTTTGCTCCAGTCCCGTTCCATGGGCAGTA 491
|||||||||||||||||||||||||||| | |||||||| |||||||||||||| |||||
Sbjct 420 ATCTGCCGCAGCTTTCGGGCATCCATATGGTTTTGCTCCGGTCCCGTTCCATGGACAGTA 479
Query 492 CAGCAACAGATCCTTGGGTATTCAGGCGCACTCAATGAGTCACAAGCTAAGTTCATATAA 551
|||||||||| |||||||||||||||| |||||||||||||| |||| ||||||||||||
Sbjct 480 CAGCAACAGAACCTTGGGTATTCAGGCACACTCAATGAGTCATAAGCCAAGTTCATATAA 539
Query 552 CGTGTTT-GGTGGTGAGTATGGTCAGATCAATTGGTCAAGGATACCACTAGTTCAGCAAC 610
||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 540 CGT-TTACGGTGGTGAGTATGGTCAGATCAACTGGTCAAGGATACCACTAGTTCAGCAAC 598
Query 611 CAGCCATAGGAAAACTAACTTCAACAGAGAATCATTATAATCATCATCAGATGATGATTG 670
|||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 CAGCAATAGCAAAACTAACTTCAACAGAGAATCATTATAATCATCATCAGATGATGATTG 658
Query 671 CTCCACCGTTGACTTCCACATGTGAAAACATCGGTAGGTTCGATGTTGGAAGGATTCCAG 730
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 659 CTCCACCGTTGACTTCCACATGTGAAAACATCGGTAGGTTCGATGTAGGAAGGATTCCAG 718
Query 731 TAGA-TTTACCAACTTCCGAACTATGGCAGAGAGGCGAGGAATTGTTGAAGCCAGCTGAA 789
|||| ||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 TAGAGTTT-CCAACTTCTGAACTATGGCAGAGAGGCGAGGAATTGTTGAAGCCAGCTGAA 777
Query 790 GAAGAGCAGCAGAAGAACCTTGACTTGTCCCTTAAACTCTGA 831
|||||| ||||||||||||||||||||||||||||||| |||
Sbjct 778 GAAGAGAAGCAGAAGAACCTTGACTTGTCCCTTAAACTTTGA 819
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41493405422
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5