BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg940569
Length=487
Score E
Sequences producing significant alignments: (Bits) Value
AT5G10990.1 | Symbols: | SAUR-like auxin-responsive protein fa... 710 0.0
AT1G75590.1 | Symbols: | SAUR-like auxin-responsive protein fa... 377 4e-104
> AT5G10990.1 | Symbols: | SAUR-like auxin-responsive protein
family | chr5:3476839-3477704 FORWARD LENGTH=866
Length=866
Score = 710 bits (384), Expect = 0.0
Identities = 449/481 (93%), Gaps = 2/481 (0%)
Strand=Plus/Plus
Query 7 GTAATCGGaaaaaaaTGGCTGGAGGTATCGGAAAATGTAGCAAGATCCGGCACATTGTGA 66
|||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 33 GTAATCGG-AAAAAATGGCTGGAGGTATCGGAAAATGTAGCAAGATCCGACACATTGTGA 91
Query 67 AGCTGAGGCAAATGCTCCGGCAATGGCGGAACAAGGCGCGGATGTCTTCTGTCAGACGAT 126
|||| ||||||||||| ||||||||||| ||||||||||| ||||| |||||||||||||
Sbjct 92 AGCTAAGGCAAATGCTTCGGCAATGGCGTAACAAGGCGCGAATGTCGTCTGTCAGACGAT 151
Query 127 CTGTGCCGTCGGATGTGCCGTCAGGACACGTGGCGGTCTACGTTGGGAGCAGTTGCAGGA 186
|||||||||| ||||| |||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 152 CTGTGCCGTCAGATGTACCGTCAGGACACGTGGCGGTTTACGTTGGGAGAAGTTGCAGGA 211
Query 187 GATTTGTGGTGCGCGCGACGTATCTGAACCATCCAATCCTGATGAATCTCTTGGTTAAGG 246
|||| ||||||| ||||||||||||||||| || || || |||||||||||||||||||
Sbjct 212 GATTCGTGGTGCTTGCGACGTATCTGAACCACCCCATTCTTATGAATCTCTTGGTTAAGG 271
Query 247 CTGAAGAGGAGTTCGGTTTTACTAACCAGGGACCGTTGGTTATCCCATGTGAAGAATCGG 306
|||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||
Sbjct 272 CTGAAGAGGAGTTCGGTTTTGCTAACCAGGGACCGTTGGTTATCCCGTGTGAAGAATCGG 331
Query 307 TTTTTGAGGAATCGATTCGGTTTATAACTCGGTCAAGTCGGTTTACTTGTACCGATGATT 366
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 332 TTTTCGAGGAATCGATTCGGTTTATAACTCGGTCAAGTCGGTTTACTTGTACCGATGATT 391
Query 367 TAAAGAAGAATTGCCACGATGGTATTATAAGCAAGCTGGATCTTTTGATGGAATCTCGGC 426
||||||||||| |||||| |||||||| |||||||||||||| ||||||||||||||||
Sbjct 392 TAAAGAAGAATCGCCACGGTGGTATTAGGAGCAAGCTGGATCTATTGATGGAATCTCGGC 451
Query 427 CGTTGCTTCACGGCGTCTCTGAGAAGGCTATCATCTGGTGACCAGAAAGAAAATTG-CAT 485
||||||||||||||||||| ||||||||||||||||||||||| || ||| ||| | |||
Sbjct 452 CGTTGCTTCACGGCGTCTCCGAGAAGGCTATCATCTGGTGACCGGAGAGACAATCGTCAT 511
Query 486 T 486
|
Sbjct 512 T 512
> AT1G75590.1 | Symbols: | SAUR-like auxin-responsive protein
family | chr1:28382896-28383768 REVERSE LENGTH=873
Length=873
Score = 377 bits (204), Expect = 4e-104
Identities = 377/456 (83%), Gaps = 30/456 (7%)
Strand=Plus/Plus
Query 12 CGGaaaaaaaTGGCTGGAGGTATCGGAAAATGTAGCAAGATCCGGCACATTGTGAAGCTG 71
||| ||||||||||||||||| |||| ||||| ||||||||||| |||||||||| |||
Sbjct 47 CGG-AAAAAATGGCTGGAGGTCTCGGGAAATGCAGCAAGATCCGTCACATTGTGAGGCTA 105
Query 72 AGGCAAATGCTCCGGCAATGGCG-GAACAAGGCGCGGATG---TCTTCTGTCAGACGATC 127
||||||||||| || | ||||| || ||| ||| ||||| |||||| |||| || |
Sbjct 106 AGGCAAATGCTTCGACGGTGGCGCGATCAA-GCGAGGATGTCTTCTTCTTTCAGCCGTTG 164
Query 128 TGTGCCGTCGGATGTGCCGTCAGGACACGTGGCGGTCTACGTTGGGAGCAGTTGCAGGAG 187
||| ||||||||||| |||||||||||||||||||||||||| || |||||||| |||||
Sbjct 165 TGTACCGTCGGATGTACCGTCAGGACACGTGGCGGTCTACGTAGGAAGCAGTTGTAGGAG 224
Query 188 ATTTGTGGTGCGCGCGACGTATCTGAACCATCCAATCCTGATGAATCT-CTTGGTT-AAG 245
||||||||||||||||||||||||||||||||| |||| | ||| || |||| || |||
Sbjct 225 ATTTGTGGTGCGCGCGACGTATCTGAACCATCCTGTCCTAAGGAACCTTCTTG-TTCAAG 283
Query 246 GCTGAAGAGGAGTTCGGTTTTACTAACCAGGGACCGTTGGTTATCCCATGTGAAGAATCG 305
|||| || ||||| ||||| |||||| || |||||||||||||| ||||||||||||
Sbjct 284 -CTGAGGAAGAGTTTGGTTTCGTTAACCAAGGTCCGTTGGTTATCCCTTGTGAAGAATCG 342
Query 306 GTTTTTGAGGAATCGATTCGGTTTATAACTCGGTC--A----A---G-TC--G--G-TTT 350
||||| ||||||||||||||||||||| | ||||| | | | || | | |||
Sbjct 343 GTTTTCGAGGAATCGATTCGGTTTATATCCCGGTCTGATTCGACCCGGTCAAGACGGTTT 402
Query 351 ACTTGTACCGATGATTTAAAGAAGAATTGCCACGATGGT---ATT-ATAAGCAAGCTGGA 406
|||||| |||||||||| ||||||||||||||| |||| | | | ||||||||| ||
Sbjct 403 ACTTGTCCCGATGATTTTCAGAAGAATTGCCACG-TGGTGGGAATCAGAAGCAAGCTTGA 461
Query 407 TCTTTTGATGGAATCTCGGCCGTTGCTTCACGGCGT 442
||| | ||| |||||||| ||||| |||||||||||
Sbjct 462 TCTATGGATCGAATCTCGACCGTTACTTCACGGCGT 497
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23208175914
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5