BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg940570
Length=1207
Score E
Sequences producing significant alignments: (Bits) Value
AT5G11000.1 | Symbols: | Plant protein of unknown function (DU... 1905 0.0
> AT5G11000.1 | Symbols: | Plant protein of unknown function (DUF868)
| chr5:3479029-3480425 REVERSE LENGTH=1397
Length=1397
Score = 1905 bits (1031), Expect = 0.0
Identities = 1152/1211 (95%), Gaps = 5/1211 (0%)
Strand=Plus/Plus
Query 1 aaaaaaaaGGAAACACAAAAATGTCTCCTTCTTGGCTCCGTCCTACCGCTGATCAAAATC 60
||||||||| |||||| ||||||||||| ||||||||||| || ||||| ||||| ||||
Sbjct 71 AAAAAAAAGTAAACACGAAAATGTCTCCGTCTTGGCTCCGCCCAACCGCCGATCACAATC 130
Query 61 ATCCTCCGCCGCCACCGCCGTCGCAATCACCGTCTCCTCTATCTTCCGGTGATCCGAATC 120
||||||| |||| ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 131 ATCCTCCACCGCAACCGCCGTCGCAATCACCGTCCCCTCTATCTTCCGGTGATCCGAATC 190
Query 121 TCACTACTTGCCTCTACCAAACAGATCACGGCGTCTTCTATCTAACATGGTCTCGAACTT 180
|||| || || ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 191 TCACAACATGTCTCTACCAAACAGATCACGGCGTCTTCTATCTAACATGGTCCCGAACTT 250
Query 181 TCTTAGGAGGCCACTCTGTGAATCTCTTCCTCCACTCACAAGATTACTACAACCActctt 240
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 251 TCTTAGGAGGCCACTCTGTGAATCTCTTCCTCCATTCACAAGATTACTACAACCACTCTT 310
Query 241 caccactctctttctcctccgccgatctctcgctctcctccgccgtctctttccatctcA 300
| |||||||||||||||||||| |||||||| || |||||||||||||||||||||||||
Sbjct 311 CGCCACTCTCTTTCTCCTCCGCTGATCTCTCTCTTTCCTCCGCCGTCTCTTTCCATCTCA 370
Query 301 ACTTAAACACATTAGCTTTCTGGAAAAAACGCGGATCCAGATTCGTTTCTCCTAAAATCC 360
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 371 ACTTAAACACATTAGCTTTCTGGAAAAAACGTGGATCCAGATTCGTTTCTCCCAAAATCC 430
Query 361 AAGTCTTCTGGGACTTAACCAAAGCCAAATTCGACTCTGGATCCGAACCTAGATCCGGAT 420
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 431 AAGTCTTCTGGGACTTAAGCAAAGCCAAATTCGACTCTGGATCCGAACCTAGATCCGGAT 490
Query 421 TCTACATCGCTGTAGTTGTTGACGGAGAGATGGGACTATTAGTCGGTGATTCCGTCAAAG 480
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 491 TCTACATCGCTGTAGTTGTTGACGGAGAGATGGGACTATTAGTCGGAGATTCAGTCAAAG 550
Query 481 AAGCTTACGCTCGTGCTAAATCGGCGAAACCTCCGACGAATCCACAAGCTCTTCTGTTGA 540
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 551 AAGCTTACGCTCGTGCTAAATCGGCGAAACCTCCGACGAATCCGCAAGCTCTTCTGTTGA 610
Query 541 GGAAAGAGCATGTGTTTGGAGCTAGGGTTTTCACAACGAAAGCTAGATTTGGAGGGAAGA 600
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 611 GGAAAGAGCACGTGTTTGGAGCTAGGGTTTTCACAACGAAAGCGAGATTTGGAGGGAAGA 670
Query 601 ACAGAGAGATTTCTATTGATTGTCGTGTTGATGAAGACGCTAAGCTCTATTTTAGCGTTG 660
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 671 ACAGAGAGATTTCTATTGATTGTCGTGTTGATGAAGACGCTAAGCTCTGTTTTAGCGTTG 730
Query 661 ATTCGAAACAGGTTTTGCAGATCAA-ACGACTTCGATGGAAATTTAGAGGAAATGAGAAA 719
|||||||||||||| |||||||||| | ||||| ||||||||||||||||||||||||||
Sbjct 731 ATTCGAAACAGGTTCTGCAGATCAAGA-GACTTAGATGGAAATTTAGAGGAAATGAGAAA 789
Query 720 GTTGAAATTGATGGTGTTCAAGTTCAAATCTCTTGGGATGTATACAATTGGCTGTTTCAG 779
|||||||| ||||| ||||| ||||| |||||||||||||||||||||||| ||||||||
Sbjct 790 GTTGAAATCGATGGAGTTCATGTTCAGATCTCTTGGGATGTATACAATTGGTTGTTTCAG 849
Query 780 AGTAAAAACTCCGGTGACGGCGGAGGAGGAGGAGGACACGCGGTGTTTATGTTTCGATTC 839
||||||| |||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct 850 AGTAAAAGTTCCGGTGACGGCGGAGGAGGAGGAGGACACGCCGTGTTTATGTTTAGATTC 909
Query 840 GAGAGTGATCCagaagcagaagaggtttgtgaaacgaagaggaaagaagaagaagatgag 899
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 910 GAGAGTGATCCAGAAGCAGAGGAGGTTTGTGAAACGAAGAGGAAAGAAGAAGAAGATGAG 969
Query 900 aaaaaccgaaaCGGTATCGTTTTATGGAAGCCGAAGCAG---TGTGGAAATAGTTTTGGG 956
||||| |||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 970 AAAAATCGAAACGGTATCGTTTTATGGAAGCCGAAGAAGCAATGTGGAAATAGTTTTGGG 1029
Query 957 ATTAAAGGAATTGTTGAGTGGAGGAAGATGAGGAAGAGATTTGTTAAGAGTAAGAGAAGT 1016
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1030 ATTAAAGGGATTGTTGAGTGGAGGAAGATGAGGAAGAGATTTGTTAAGAGTAAGAGAAGT 1089
Query 1017 TCGTCATCGTCGTCGATTTCGATGTCGTCGGCTTCTTCGGCGTGTAGTTCATCGGTTATG 1076
|| || ||||| ||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 1090 TCTTCGTCGTCTTCGATTTCGATGTCGTCGGCTTCTTCGGCGTGTAGCTCGTCGGTTATG 1149
Query 1077 GAGTGGGCAAGTAGTGCTGATGAGGCGGAGTACGGCGGCGGAGGATCTTCTGGTTCTGGT 1136
|| ||||| ||||||||||||||||||||||||||||| ||||| | ||||||||| |||
Sbjct 1150 GAATGGGCTAGTAGTGCTGATGAGGCGGAGTACGGCGGAGGAGGTTGTTCTGGTTCCGGT 1209
Query 1137 TCCGGCAATGGTCTTGGATTCTCATTACTGGTTTACGCTTGGATTAAGTGAAAATATTCT 1196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1210 TCCGGCAATGGTCTTGGATTCTCATTACTGGTTTACGCTTGGATTAAGTGAAAATATTCT 1269
Query 1197 TTTTCGAGGGA 1207
|||||||||||
Sbjct 1270 TTTTCGAGGGA 1280
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59286843645
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5