BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg940588
Length=766
Score E
Sequences producing significant alignments: (Bits) Value
AT5G11140.1 | Symbols: | Arabidopsis phospholipase-like protei... 1037 0.0
> AT5G11140.1 | Symbols: | Arabidopsis phospholipase-like protein
(PEARLI 4) family | chr5:3545343-3546068 FORWARD LENGTH=726
Length=726
Score = 1037 bits (561), Expect = 0.0
Identities = 671/726 (92%), Gaps = 0/726 (0%)
Strand=Plus/Plus
Query 21 ATGAGTATATGTTCAGAGATCTCTCTACTTCATGTTCCTCATTGGAACAGTGCATACTCT 80
|||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1 ATGAGTTTATGTTCAGAGATCTCTCAACTTCATGTTCCTCATTGGAACAGTGCATACTCT 60
Query 81 GTTTTCAATGATGATGACGACAAAGACTCTGTTTTACTCTTCCCTGAGCTCCTTTTTTCT 140
||||||||||||||| ||||||||||||||||| |||||||||||||||| |||||||||
Sbjct 61 GTTTTCAATGATGATAACGACAAAGACTCTGTTCTACTCTTCCCTGAGCTTCTTTTTTCT 120
Query 141 CCATTGAGCAAGTCTCTTGTGATCAAAACCTCTGATTCGTGCGACGTTGTGTCTGTCGGA 200
||||||| |||| |||||||||||| ||||||||||||||| |||||||| || ||||||
Sbjct 121 CCATTGAACAAGGCTCTTGTGATCACAACCTCTGATTCGTGGGACGTTGTCTCCGTCGGA 180
Query 201 GAATACAAAGTCAAAGCTAGTCTATCCTCTACTCTTCAAAGCATATTCGATAAGTATGGA 260
||||||||||||||||||||||| ||||| |||||||||||||| ||||| |||||||||
Sbjct 181 GAATACAAAGTCAAAGCTAGTCTCTCCTCCACTCTTCAAAGCATTTTCGACAAGTATGGA 240
Query 261 GACATCACATCAAATTCCAAGCTACAGTCTCTTTCAACACGAATATATCACCTCGAGACT 320
||||||||||| ||||||||||| || || || || ||||||| |||||||||||||||
Sbjct 241 GACATCACATCGAATTCCAAGCTCCAATCACTCTCCACACGAACATATCACCTCGAGACA 300
Query 321 CTAGCCGAGGTTGTTATCGAACTCCAGTCAACGCCTCTGCGTAGGCTATCTGAAACACGG 380
||||| |||||||||||||||||||||||||||||||| ||| || |||||||| |||||
Sbjct 301 CTAGCGGAGGTTGTTATCGAACTCCAGTCAACGCCTCTACGTCGGTTATCTGAATCACGG 360
Query 381 GCCATTGAGATTCTAGCGATCGTTAATGACATTGAGACGGCAAAGATCCGAGTAGGTTGG 440
|||| |||||||||||| |||||| ||||||| || ||||||||||||||||||||||||
Sbjct 361 GCCACTGAGATTCTAGCAATCGTTGATGACATAGAAACGGCAAAGATCCGAGTAGGTTGG 420
Query 441 CTCCGGTCCGTTCTTGAGGAGGTTCTTGAAGCCACAAGGTACTTTGACAGACGCGAAATG 500
|||||||||||||||||||||||||||||||| |||||||| ||||||||| ||||||||
Sbjct 421 CTCCGGTCCGTTCTTGAGGAGGTTCTTGAAGCTACAAGGTATTTTGACAGATGCGAAATG 480
Query 501 GCAGTTATGGAGAAAAAGGCCTGTGAGCACGGTTTGTTGCTTGCAAAGCAAGAAATGGAA 560
||||||||||||||||||||| | |||||| |||| ||||||||||||||||||||||||
Sbjct 481 GCAGTTATGGAGAAAAAGGCCGGCGAGCACCGTTTATTGCTTGCAAAGCAAGAAATGGAA 540
Query 561 GTGAGTTTGAAGAAGCTTGCAGAGAAGGAGAAGGAGATGAATGAGTTTAGGGAGAGACTG 620
||||||||||||||||||||||||| |||||||||||||| ||||||||||||| | |
Sbjct 541 CTGAGTTTGAAGAAGCTTGCAGAGAAAGAGAAGGAGATGAAAGAGTTTAGGGAGAAATTA 600
Query 621 ATGGAGACAACAGGGAAATTGGGTTCGTTGGAGATGAAGCGGACGTGTCTTGATAAGAGA 680
||| ||||||||||||||||||||||| |||||||||| |||||||| ||||||||||||
Sbjct 601 ATGAAGACAACAGGGAAATTGGGTTCGCTGGAGATGAAACGGACGTGCCTTGATAAGAGA 660
Query 681 TTTGTGTTTCTGAGATCTAAAGTCGAGAAGTTTCAAGATCAATCTGTTTTTAACGACGTT 740
|| |||||||||||||||||||||||||||||||||| ||||||||||||| | ||| ||
Sbjct 661 TTAGTGTTTCTGAGATCTAAAGTCGAGAAGTTTCAAGGTCAATCTGTTTTTCAGGACATT 720
Query 741 TTGTGA 746
||||||
Sbjct 721 TTGTGA 726
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37223502927
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5