BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg940606
Length=1850
Score E
Sequences producing significant alignments: (Bits) Value
AT5G11310.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 2772 0.0
> AT5G11310.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily
protein | chr5:3606402-3608617 FORWARD LENGTH=2105
Length=2105
Score = 2772 bits (1501), Expect = 0.0
Identities = 1740/1855 (94%), Gaps = 17/1855 (1%)
Strand=Plus/Plus
Query 1 TTCCAAT-AACGGCGGCAGAAAATGAACTCTCTGTTCACCTCCTTCCGCCGCAACCTCTT 59
||| ||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 67 TTCTAATAAACGGCGGCAGAAAATGAACTCTCTGTTCACCGCCTTCCGCCGCAACCTCCT 126
Query 60 CTTAAACCCTAATCCTCACCGCAACTTCCTTCTTGATAGATTGTTATCATCATCTCGCCG 119
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 127 CTTAAACCCTAATCCTCACCGCAACTTCTTTCTTCATAGATTGTTATCATCATCTCGCCG 186
Query 120 TTCATCCCCGCTCATTCCCGTCGAGCCTCTCATCCAACGGTTACAATCACCCGCCGCACA 179
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct 187 TTCATCCCCGCTCATTCCCGTCGAGCCTCTCATCCAACGGATACAATCACCCGCCGTACC 246
Query 180 TGATTCTACACCGCA-T-CAAATC-AC-CGTC-CCTGATTTCTCGAAAACCGATCTCTCC 234
||||||||| | | | || | || | || | |||||||||||||||||||
Sbjct 247 CGATTCTACA-TGTACTCCACCGCAACAAAACACC-G---TCTCGAAAACCGATCTCTCT 301
Query 235 ACTATATCGAATCTTCTCGAAAACACTAATGTTGTTCCCGGTTCGAGTCTCGAGTCGGCT 294
|||||||||||||||||||| |||||| |||||||||||||||||||||||||||| |||
Sbjct 302 ACTATATCGAATCTTCTCGAGAACACTGATGTTGTTCCCGGTTCGAGTCTCGAGTCAGCT 361
Query 295 TTGGATGAAACCGGAATCGAACCGAGTCTTCAATTGGTTCAGGCGTTGTTCGATCGGTTA 354
|| |||||||||||||||||||||||| || | |||||||| ||||||||||||||||||
Sbjct 362 TTAGATGAAACCGGAATCGAACCGAGTGTTGAGTTGGTTCACGCGTTGTTCGATCGGTTA 421
Query 355 AGTTCATCGCCGATGTTGCTTCACTCAGTGTTCAAATGGGCGGAGATGAAACCTGGCTTT 414
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 422 AGTTCATCGCCGATGTTGCTTCACTCAGTGTTCAAATGGGCGGAGATGAAACCTGGGTTT 481
Query 415 ACGCTTTCTCCTTCACTGTTT-AATTCTGTTATCAATTCTCTCTGTAAAGCTCGGGAATT 473
|| |||||||||||||| ||| |||||||| |||||||||| ||||||||||| |||||
Sbjct 482 ACACTTTCTCCTTCACT-TTTCGATTCTGTTGTCAATTCTCTATGTAAAGCTCGTGAATT 540
Query 474 TGAAATTGCTTGGTCGTTGGTTTTTGATCGAGTGAGACGCGATGAAGGATCGAATTTGGT 533
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 541 TGAAATTGCTTGGTCGTTGGTTTTTGATCGAGTGAGAAGCGATGAAGGATCGAATTTGGT 600
Query 534 TTCTGCAGATACGTTTATCGTTTTGATCAGACGGTATGCTCGTGCTGGTATGGTGCAACA 593
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 TTCTGCAGATACGTTCATCGTTTTGATCAGACGGTATGCTCGTGCTGGTATGGTGCAACA 660
Query 594 AGCTATACGAGCTTTCGAATTCGCTAGAAGTTATGAACCGGTGTGTAAATCAGCTTCGGA 653
||||||||||||||| |||||||||||||||||||||||||| |||||||||||| ||||
Sbjct 661 AGCTATACGAGCTTTTGAATTCGCTAGAAGTTATGAACCGGTTTGTAAATCAGCTACGGA 720
Query 654 ACTTAAGTTGCTTGAGGTTTTATTAGATGCACTTTGTAAAGAAGGACATGTTAGAGAAGC 713
||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 721 ACTTAGGTTGCTTGAGGTTTTGTTAGATGCACTTTGTAAAGAAGGTCATGTTAGAGAAGC 780
Query 714 TTCAATGTATTTGGAGAGAAGAAGAGGGATGATGGATTCAAATTGGCTTCCTTCTGTTCG 773
|||||||||||||||||||| | |||||| ||||||||| |||||| |||||||||||||
Sbjct 781 TTCAATGTATTTGGAGAGAATAGGAGGGACGATGGATTCGAATTGGGTTCCTTCTGTTCG 840
Query 774 GATTTTCAACATTTTATTGAATGGATGGTTTCGTTCGAGAAAACTGAAGCAGGCAGAGAA 833
|||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||
Sbjct 841 GATTTTCAACATTTTATTGAATGGATGGTTTCGTTCAAGAAAGCTAAAGCAGGCAGAGAA 900
Query 834 GCTGTGGGAAGAGATGAAAGCGATGAATGTGAAGCCGACTGTTGTTACTTATGGTACTCT 893
| | ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 901 GTTATGGGAAGAGATGAAAGCGATGAATGTGAAGCCGACTGTTGTTACTTACGGTACTCT 960
Query 894 CATAGAAGGGTATTGCAGGATGCGTCGTGTTGAGATTGCTATGGAGATTCTTGAAGAAAT 953
|| ||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 961 TATCGAAGGGTATTGCAGGATGCGTCGTGTTCAGATTGCTATGGAGGTTCTTGAAGAAAT 1020
Query 954 GAAGATGGCAGAAATGGAGCTTAATTTTATGGTCTTTAACCCGATAATCGATGGTTTAGG 1013
||||||||||||||||||| ||||||||||||||||||| ||||| ||||||||||||||
Sbjct 1021 GAAGATGGCAGAAATGGAGATTAATTTTATGGTCTTTAATCCGATTATCGATGGTTTAGG 1080
Query 1014 AGAAGCGGGACGGTTAAGTGAAGCTCTAGGTATGATGGAAAGGTTCTTCGTTTGCGAATC 1073
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1081 AGAAGCGGGGCGGTTAAGTGAAGCTCTAGGTATGATGGAAAGGTTCTTCGTTTGTGAATC 1140
Query 1074 AGGTCCTACCATAGTGACTTATAATTCACTAGTGAAGAATTTCTGCAAGGCTGGAGATCT 1133
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 AGGTCCTACTATAGTGACTTATAATTCACTAGTGAAGAATTTCTGCAAGGCTGGAGATCT 1200
Query 1134 TCCTGGTGCTAGCAAGATACTGAAGATGATGATGGCAAGAGGCGTTGATCCTACCACAAC 1193
||||||||||||||| ||||| |||||||||||| || |||| |||||||||||||| ||
Sbjct 1201 TCCTGGTGCTAGCAAAATACTCAAGATGATGATGACACGAGGTGTTGATCCTACCACGAC 1260
Query 1194 TACATACAACCATTTCTTCAAGTATTTCTCAAAGCATAACAAAACGGAAGAGGGAATGAA 1253
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1261 TACATACAACCATTTCTTCAAGTATTTCTCAAAGCATAACAAAACGGAAGAGGGCATGAA 1320
Query 1254 CTTATACTTCAAGTTGATTGAAGCTGGGCATAGTCCAGACCGGTTGACGTACCATTTGAT 1313
|||||| |||||||||||||||||||| || |||||||||||||| ||||| ||||||||
Sbjct 1321 CTTATATTTCAAGTTGATTGAAGCTGGACACAGTCCAGACCGGTTAACGTATCATTTGAT 1380
Query 1314 CTTGAAAATGCTCTGTGAGGATGGGAAGCTGAGCTTGGCGATGCAAGTGAACAAGGAGAT 1373
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1381 CTTGAAAATGCTGTGTGAGGATGGGAAGCTGAGCTTGGCGATGCAAGTGAACAAGGAGAT 1440
Query 1374 GAAAAACAGAGGAATCGATCCTGACTTATTAACCACCACAATGCTGATGCATTTGCTCTG 1433
||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||
Sbjct 1441 GAAAAACAGAGGAATCGATCCTGACTTATTAACAACCACAATGCTTATACATTTGCTCTG 1500
Query 1434 CAGACTCGACATGTTAGAAGAAGCATTCGAAGAGTTTGACAACGCGGTCAGACGAGGGAT 1493
||||||||| |||||||||||||| || ||||||||||||||||| || |||||||||||
Sbjct 1501 CAGACTCGAGATGTTAGAAGAAGCCTTTGAAGAGTTTGACAACGCAGTGAGACGAGGGAT 1560
Query 1494 TATTCCACAGTACATCACATTTAAGATGATCGATAACGGGTTGAGATCGAAAGGGATGAC 1553
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1561 TATTCCACAGTACATCACATTTAAGATGATCGATAACGGGTTGAGATCGAAAGGGATGAG 1620
Query 1554 CGATATGGCGAAGAGACTATCCAGCCTAATGGCGGCTCTTCCTCACTCGAAGAAGCTGCC 1613
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 1621 CGATATGGCGAAGAGACTATCCAGCCTAATGTCGTCTCTTCCTCACTCGAAGAAGCTGCC 1680
Query 1614 AAATACATACAGAGAAGCGGTAGATGCACCGCCTGATAAAGATAGAAGGAAGTCTATTTT 1673
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1681 AAATACATACAGAGAAGCAGTAGATGCACCGCCTGATAAAGATAGAAGGAAGTCTATTTT 1740
Query 1674 GCATAGAGCAGAAGCAATGTCTGATGTGTTGAAAGGTTGCAGAAACCCGAGAAAACTCGT 1733
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1741 GCATAGAGCAGAAGCCATGTCTGATGTGTTGAAAGGTTGCAGGAACCCGAGAAAACTCGT 1800
Query 1734 GAAGATGCGTGGATCACACAAAAAAGGTGTCCGTGAAGA--TGAAAGCTTGACAGATGAT 1791
||||||||||||||| |||||||||| ||| ||||||| | ||| || || |||||||
Sbjct 1801 GAAGATGCGTGGATCGCACAAAAAAGCTGTTGGTGAAGACAT-AAACCT-GATAGATGAT 1858
Query 1792 CTCAATGAACGAAGTGGAGATTCAGGGGATTTTGAGTGAGAGCACTCTTTTGTAA 1846
|||||||||||| ||||||| |||||||||||||||||||||||||| ||||||
Sbjct 1859 ATCAATGAACGAAATGGAGATGCAGGGGATTTTGAGTGAGAGCACTCTCTTGTAA 1913
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91565794080
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5