BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg940608
Length=1262
Score E
Sequences producing significant alignments: (Bits) Value
AT5G11330.1 | Symbols: | FAD/NAD(P)-binding oxidoreductase fam... 1916 0.0
> AT5G11330.1 | Symbols: | FAD/NAD(P)-binding oxidoreductase family
protein | chr5:3617215-3618897 REVERSE LENGTH=1390
Length=1390
Score = 1916 bits (1037), Expect = 0.0
Identities = 1172/1237 (95%), Gaps = 10/1237 (1%)
Strand=Plus/Plus
Query 12 TTTGATGAGATGGGGAAGAAGAAAGGGAAAGCGATCATAGTAGGAGGAAGTATAGCAGGC 71
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 28 TTTGATGAGATGGGGAAGAAGAAAGGGAAAGCGATCATAGTAGGAGGAAGTATAGCAGGC 87
Query 72 TTATCTTGCGCACACTCGCTCACGTTAGCAGGCTGGAATGTTTTGGTTCTCGAGAAATCT 131
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 88 TTATCTTGCGCACACTCGCTCACGTTAGCATGCTGGGATGTTTTGGTTCTCGAGAAATCT 147
Query 132 TCCGAACCTCCGGTTGGGAGTCCTACTGGTGCTGGTCTCGGACTCGACCCTCAGGCTCGC 191
||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 148 TCCGAACCTCCTGTTGGGAGTCCTACTGGTGCTGGGCTCGGACTCGACCCTCAGGCTCGG 207
Query 192 CAAATCATCAAATCCTGGCTTCCT-CGTCCACACCTCTTAGATGAAATCACCTTGCCTCT 250
|| ||||||||||| |||||| || | |||||| ||||||||||||||||||||||||||
Sbjct 208 CAGATCATCAAATCATGGCTTACTAC-TCCACAGCTCTTAGATGAAATCACCTTGCCTCT 266
Query 251 CTCAATTGATCAGAATCAGACAACAGATAGTGAGAAGAAAGAGACGAA-GATTCTAACAA 309
||| |||||||||||||||||||| |||||||||||||||| ||| || |||| ||||||
Sbjct 267 CTCGATTGATCAGAATCAGACAACTGATAGTGAGAAGAAAGTGAC-AAGGATTTTAACAA 325
Query 310 GAGATGAGGATTTCGATTTCCGAGCAGCTTATTGGTCAGATGTTCACTCTCTTCTGTATA 369
||||||||||||| ||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct 326 GAGATGAGGATTTTGATTTCCGAGCAGCTTATTGGTCAGATATTCAATCTCTTCTGTATA 385
Query 370 AAGCATTGCCTCAAACCATGTTTCTTTGGGGACATAAGTTTCTGTCTTTCACAATGTCAC 429
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 386 ACGCATTGCCTCAGACCATGTTTCTTTGGGGACATAAGTTTCTGTCTTTCACAATGTCAC 445
Query 430 AAGATGAATCTATTGTAAAGGTTAAGACTTTAGTTATAGAAACTCAAGAAACTGTTGAAA 489
|||||||||||| |||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 446 AAGATGAATCTAATGTAAAGGTTAAGACTTTAGTTGTGGAAACTCAAGAAACTGTTGAAA 505
Query 490 TTGAAGGAGATTTACTTGTTGCAGCAGATGGGTGTTTGTCTTCTATTCGGAAAACTTTCT 549
|||||||||| |||||| ||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 506 TTGAAGGAGACTTACTTATTGCAGCTGATGGGTGTTTGTCTTCGATTCGGAAAACTTTCT 565
Query 550 TGCCTGACTTTAAACTGAGGTACTCTGGTTATTGTGCTTGGAGAGGTGTTTTTGATTTCT 609
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 566 TGCCTGACTTTAAACTGAGGTACTCTGGTTATTGTGCTTGGAGAGGTGTATTTGATTTCT 625
Query 610 CAGGGAATGAGAACTCGGAAACAGTTACTGGAATTAAGAAAGTGTATCCGGATCTTGGAA 669
||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 626 CAGGGAATGAGAACTCGGAAACAGTTAGTGGGATTAAGAAAGTGTATCCGGATCTTGGAA 685
Query 670 AATGCTTGTATTTTGATCTCGGTGAACAGACTCATACCGTGTTTTACGAGCTTTTTAACA 729
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 686 AATGCTTGTATTTTGATCTCGGTGAACAGACTCATAGCGTGTTTTACGAGCTTTTTAACA 745
Query 730 AGAAACTCAACTGGATTTGGTATGTCAATCAACCAGAGCCTGACCTGAAAAGCAACTCTG 789
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 746 AGAAACTCAACTGGATTTGGTATGTCAATCAACCAGAGCCTGACCTGAAAAGCAACTCTG 805
Query 790 TTACTCTAAAAGTGAGTCAAGAAATGATCAATAAGATGCATCAAGAAGCAGAAACCATCT 849
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 806 TTACTCTAAAAGTGAGTCAAGAAATGATCAATAAGATGCATCAAGAAGCAGAAACCATTT 865
Query 850 GGATCCCGGAGCTAGCGAGACTCATGAGAGAAACAAAGGATCCTTTCCTTAATGTTATTT 909
||||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 866 GGATCCCCGAACTAGCGAGACTCATGAGTGAAACAAAGGATCCTTTCCTTAATGTTATTT 925
Query 910 ACGATTGTGACCCTTTAGAACGGATCTTCTGGGGAAACATCGTGCTGGTTGGAGATGCTG 969
|||| | ||||||||||||||| ||||| ||||||||||||||| |||||||||| || |
Sbjct 926 ACGACTCTGACCCTTTAGAACGAATCTTTTGGGGAAACATCGTGTTGGTTGGAGACGCGG 985
Query 970 CTCATCCCACTACCCCCCATGGTCTAAGAAGCACAAACATGTCAATACTTGATGCGGAAG 1029
|||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 986 CTCATCCCACGACCCCTCATGGTCTAAGAAGCACAAACATGTCGATACTTGATGCGGAAG 1045
Query 1030 TGCTAGGCAAATGCCTGGAGAAATGTGGACCTGATAATCTAAGTTTGGGTCTAAAGGAAT 1089
|||||||||||||| | ||||| ||||||||||| ||| ||||||||||||| ||||||
Sbjct 1046 TGCTAGGCAAATGCTTAGAGAACTGTGGACCTGAGAATGTAAGTTTGGGTCTTGAGGAAT 1105
Query 1090 ATCAGAGAATAAGATTGCCTGTTGTTTCTGAGCAAGTTTTGTATGCAAGGCGTTTGGGGC 1149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1106 ATCAGAGAATAAGATTGCCTGTTGTTTCTGAGCAAGTTTTGTATGCAAGGCGTTTGGGGC 1165
Query 1150 GTATCAAGCAAGGTCTGGATCATGACGGAATTGGAGGTGGCG-----G-TTTGGAGCAGA 1203
|||||||||||||||||||||||||||||||||||| ||||| | |||||||||||
Sbjct 1166 GTATCAAGCAAGGTCTGGATCATGACGGAATTGGAGATGGCGTTTTTGGTTTGGAGCAGA 1225
Query 1204 GAACCATGCCAtttttttCTTGTGCTCCCCTTGTCTA 1240
||| ||||||||| ||||| |||||||||||| ||||
Sbjct 1226 GAAACATGCCATTCTTTTCCTGTGCTCCCCTTATCTA 1262
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62047873620
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5