BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg940609

Length=535
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G11340.1 | Symbols:  | Acyl-CoA N-acyltransferases (NAT) sup...   898    0.0  


> AT5G11340.1 | Symbols:  | Acyl-CoA N-acyltransferases (NAT) superfamily 
protein | chr5:3619155-3621301 FORWARD LENGTH=799
Length=799

 Score =  898 bits (486),  Expect = 0.0
 Identities = 518/534 (97%), Gaps = 0/534 (0%)
 Strand=Plus/Plus

Query  2    TCTAGATTGTTCGACGGCGATGGGAGCTGGGAGAGAAGTCAGCGTATCGCTAGATGGAGT  61
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  53   TCTAGATTGTTCGACGGCGATGGGAGCTGGGAGAGAAGTCAGCGTATCGCTAGATGGAGT  112

Query  62   CAGAGACAAAAACTTGATGCAGCTTAAGAAACTCAACACGGTTTTGTTCCCGGTTCGTTA  121
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  113  CAGAGACAAAAACTTGATGCAGCTTAAGATACTCAACACGGTTTTGTTCCCGGTTCGTTA  172

Query  122  CAACGACAAGTACTACGCCGATGCAATCGCTTCCGGCGAATTCACCAAGCTTGCATATTA  181
            ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct  173  CAACGACAAGTACTACGCCGATGCAATCGCTGCCGGCGAATTCACCAAGCTTGCATATTA  232

Query  182  CAGTGACATATGTGTTGGAGCTATCGCTTGTCGGCTGGAGAAGAAAGAAGGTGGAGCCAT  241
            || |||||||||||||||||||||||| ||||||||||||||||||||| |||| |||||
Sbjct  233  CAATGACATATGTGTTGGAGCTATCGCCTGTCGGCTGGAGAAGAAAGAAAGTGGGGCCAT  292

Query  242  GCGAGTTTATATAATGACGCTTGGTGTTCTTGCACCATACCGTGGGATTGGCATTGGTTC  301
            |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct  293  GCGAGTTTATATAATGACGCTTGGTGTTCTTGCACCCTACCGTGGGATTGGCATTGGCTC  352

Query  302  AAAGCTATTGAATCATGTTCTTGAGATGTGCTCCAAGCAAAACATGTGTGAAATATACTT  361
            ||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct  353  AAATCTATTGAATCATGTTCTTGACATGTGCTCCAAGCAAAACATGTGTGAGATATACTT  412

Query  362  GCACGTGCAGACAAACAACGAAGACGCGATCAAGTTCTACAAGAAGTTCGGGTTCGAGAT  421
            ||| ||||||||||||||||||||||| ||||||||||||||||||||||| || |||||
Sbjct  413  GCATGTGCAGACAAACAACGAAGACGCAATCAAGTTCTACAAGAAGTTCGGCTTTGAGAT  472

Query  422  CACAGATACCATACAAAACTATTACATCAACATTGAGCCAAGAGATTGCTACGTTGTCAG  481
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  473  CACAGATACCATACAAAACTATTACATCAACATTGAGCCAAGAGATTGCTACGTTGTCAG  532

Query  482  CAAGTCCTTTGCTCAATCTGAAGCCAACAAATGATGAAAAATACCCAACTTGGG  535
            ||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct  533  CAAGTCCTTTGCTCAATCTGAAGCCAACAAATGATGAAAAATACCAAACTTGGG  586



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25619414970


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5