BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg940610
Length=2304
Score E
Sequences producing significant alignments: (Bits) Value
AT5G11350.1 | Symbols: | DNAse I-like superfamily protein | ch... 3435 0.0
> AT5G11350.1 | Symbols: | DNAse I-like superfamily protein |
chr5:3621561-3625645 FORWARD LENGTH=2520
Length=2520
Score = 3435 bits (1860), Expect = 0.0
Identities = 2161/2305 (94%), Gaps = 25/2305 (1%)
Strand=Plus/Plus
Query 9 AATTCGATTGACCAATGCGGCGTTCTCGTTTTCTCGCCCAAGTTTTCTCCGACGCTT-CC 67
|||||||||||||||||||||||||||||||| | || |||||||||||||||| || ||
Sbjct 9 AATTCGATTGACCAATGCGGCGTTCTCGTTTTGTTGCTCAAGTTTTCTCCGACG-TTACC 67
Query 68 TTCACTGACGTATCCACTACT-TCTGCTCCAATCGTCGCCATGTCTACTCGTGCTCCGTA 126
||| |||||| ||||||| | |||||||||||| || ||||||||||||||||||||||
Sbjct 68 TTCGCTGACGCCTCCACTA-TCTCTGCTCCAATCTTCACCATGTCTACTCGTGCTCCGTA 126
Query 127 CAGAGGTGGCCGA-G--GA--A-GAGGCCGAGGCGGGAGAAGTTTCTCCGATCGTCCGTA 180
|||||||| |||| | || | |||||||||| ||||||||||||||||||||||||||
Sbjct 127 CAGAGGTGCCCGAGGACGAGGACGAGGCCGAGGTGGGAGAAGTTTCTCCGATCGTCCGTA 186
Query 181 CAATAATGACGCAGGAAGAAGAGATCAGTTCGTTACTGGAGACTCGCATTTTCAGTCAGT 240
|||| ||||||| || ||||||||||||||||||||||||| || |||||||| |||||
Sbjct 187 CAATGATGACGC-GG--GAAGAGATCAGTTCGTTACTGGAGATTCTCATTTTCAATCAGT 243
Query 241 TCATGACGCCAATCTCCGATTCCGACATGGTGAATCTTATCGACAACCTCAACCTCCGCT 300
||||||||||||| |||||||||| ||||||||| |||||||||||| ||| ||||||||
Sbjct 244 TCATGACGCCAATTTCCGATTCCGGCATGGTGAACCTTATCGACAACATCAGCCTCCGCT 303
Query 301 AGATCAGCGGCAGCAACCACCGTTCAATCAGAATTACGAATTTCGGCCTCGGCCGCCGTC 360
|||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct 304 TGATCAGCGGCAGCAACCACCGTTCAATCAGAATTACGAATTTCGACCTCCGCCGCCGTC 363
Query 361 TCGAGGTCAGTGGCAACAATTTCGTCAACCTAATCA-TTTACCGTCCAATCAAAGCTATG 419
|||||||||||||||||||| |||||||||||||| ||| ||||| ||||||| ||| |
Sbjct 364 ACGAGGTCAGTGGCAACAATTCCGTCAACCTAATCAGTTT-CCGTCTAATCAAAACTACG 422
Query 420 CGGCATACCCTCCCCCTCCGTTCTATCAAAACCAAATGTCTCGGCCGCCTCCACATCAGA 479
|||| | ||||||||||||||||||||||||||| ||||| |||||||||||||| ||||
Sbjct 423 CGGCTTGCCCTCCCCCTCCGTTCTATCAAAACCAGATGTCCCGGCCGCCTCCACAGCAGA 482
Query 480 GCTTTCGTCAACGGCCACGGTCAAAACCTTCAGATTACCGGGAATGGGAATATGCCAAAA 539
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 483 GCTTTCGTCAACGGCCACGGTCAAAACCTTCAGATTACCGTGAATGGGAATATGCCAAAA 542
Query 540 CGCCACCGTCTCCTGGCTCCGAAAAGTTTGTTGTTTTATCGTATAATATCTTGGCGGATT 599
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 543 CGCCACCGTCTCCTGGCTCCGAAAAGTTTGTTGTTTTATCGTATAATATATTGGCGGATT 602
Query 600 ACCTTGCAAATGATCACTGGAGAAGTCTTTACTTTCACATACCGAGGAATATGTTGAGTT 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 603 ACCTTGCAAATGATCACTGGAGAAGTCTTTACTTTCACATACCGAGGAATATGTTGAGTT 662
Query 660 GGGGATGGAGAAAGAGCAAATTAGTGTTCGAGCTTGGCCTATGGTCTGCAGATATAATGT 719
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 663 GGGGATGGAGAAAGAGCAAATTAGTGTTCGAGCTTAGCCTATGGTCTGCAGATATAATGT 722
Query 720 GCCTTCAGGAAGTTGATAAATTTCAGGATTTAGAGGAGGAGATGAAGCACCGGGGATATA 779
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 723 GCCTTCAGGAAGTTGATAAATTTCAGGACTTAGAGGAGGAGATGAAGCACCGGGGATATA 782
Query 780 GTGCCATTTGGAAGATGCGGACTGGTAATGCTGTTGACGGCTGTGCAATATTTTGGCGAT 839
|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 783 GTGCTATTTGGAAGATGCGGACTGGTAATGCTGTTGACGGATGTGCAATATTTTGGCGAT 842
Query 840 CAAATAGATTCAAGTTGGTTCACGAGGAAAGCATCCAGTTCAATCAACTTGGTCTTCGGG 899
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 843 CCAATAGATTCAAGTTGGTTCACGAGGAAAGCATCCAGTTCAATCAACTTGGTCTCCGAG 902
Query 900 ATAATGTTGCTCAAATATGTGTGTTTGAGACACTGTTGACTTCACATACAAAAGAAAATG 959
|||| |||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 903 ATAACGTTGCTCAAATATGTGTGCTTGAGACATTGTTGACTTCACATACAAAAGAAAATG 962
Query 960 AGACCCCTCCACCTGAAAGCTCTGCTGGTTCCTGCCGAGTTGTCATTTGTAACATTCACG 1019
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 963 AGACCCCTCCACCTGAAAGCTCTGCTGGTTCCCATCGAGTTGTCATTTGTAACATTCACG 1022
Query 1020 TGCTTTTTAATCCTAAAAGAGGAGACTTTAAACTTGGTCAGGTCAGGACACTCTTAGATA 1079
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1023 TGCTTTTTAATCCTAAAAGAGGAGACTTTAAACTTGGTCAGGTCAGAACACTCTTAGATA 1082
Query 1080 AAGCTCATGCTGTTTCAAAACTCTGGGATGATGCGCCTATTGTTCTTTGTGGGGATTTCA 1139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1083 AAGCTCATGCTGTTTCAAAACTCTGGGATGATGCGCCTATTGTTCTTTGTGGGGATTTCA 1142
Query 1140 ATTGTACACCAAAGAGTCATTTGTACAACTTTATTTCAGACCGGAAGTTGGATTTGTCTG 1199
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1143 ATTGTACACCAAAGAGTCCTTTGTACAACTTTATTTCAGACCGGAAGTTGGATTTGTCTG 1202
Query 1200 GTTTGGCCAGAGACAAAGTTTCGGGGCAAGTTTCTGCTGAGTTTCGTCCACCAAGGCCAG 1259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1203 GTTTGGCCAGAGACAAAGTTTCGGGGCAAGTTTCTGCTGAGTTTCGTCCACCAAGGCCAG 1262
Query 1260 AAAGTTATACGACGAGGTTTCAGTCCGCCAATAAATCTCCACAAGGTCAAGTTCAACTAC 1319
||| |||||| ||||||| |||||||||||| ||||||||||||||||||||||||| ||
Sbjct 1263 AAAATTATACAACGAGGTATCAGTCCGCCAACAAATCTCCACAAGGTCAAGTTCAACCAC 1322
Query 1320 CAGATTCGATCACAAATGCTCATATGGAGAATAACTCCAACATAGATGTTGAAACGCCCC 1379
|| ||| |||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 1323 CAAATTTGATCACAAATGCTCATATGGAGAATAACTCCAACATAGATGTTGGAACGGCCC 1382
Query 1380 CCTCCGAAAAGACATCTGAGCTTCCATGTGGTGATACAATTCTTGCTGCTCACGAAGCCA 1439
||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1383 CCTCCGAGAAGACATCTGAGCTTCCATGTGGTGATACAATTCTTGCTGGTCACGAAGCCA 1442
Query 1440 CCTCGAGCTCTGACCAAGTATTACCAGGCGAGAATATGGCCTCAGATTGTAATTTTGAAA 1499
|||| ||||||||||||||||||||| ||||||||||||||||||||||| | |||| ||
Sbjct 1443 CCTCCAGCTCTGACCAAGTATTACCATGCGAGAATATGGCCTCAGATTGTCAGTTTGGAA 1502
Query 1500 TAGAAAACAGAAAACCTGATGACTCCGGGAATCTCTCGATAGCTGAAGATCTTTCTACAG 1559
|||||||||||||||||||||| |||||||||||||||| |||||||||||||||| ||
Sbjct 1503 TAGAAAACAGAAAACCTGATGATTCCGGGAATCTCTCGACAGCTGAAGATCTTTCTTCAC 1562
Query 1560 TAATTATATCAGATACAGAACCTCAACATGCTTCCAGTGCTAGAGAAGATTTGAATACAG 1619
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1563 TAACCATATCAGATACAGAACCTCAACATGCTTCCAGTGCTAGAGAAGATTTGAATACAG 1622
Query 1620 ATCATTTTGTAAGTTCGGGTTTATCAGAAACAGAGCATTCTCCTGAGGAAATATGTTCCA 1679
||| || ||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 1623 ATCGTTCTGTAAGTTCCGGTTTATCAGAAACAGAGCAAACTCCTGAGGAAATATGTTCCA 1682
Query 1680 GTGATCAAGGTATTTCATCTAGTCTCTCCACCAAGGTTGACAATACTT-TGGCTGAGATG 1738
||||||||| |||||||||||||||||||||||||||||||| | || ||||||| |||
Sbjct 1683 GTGATCAAGATATTTCATCTAGTCTCTCCACCAAGGTTGACACTT-TTGTGGCTGAAATG 1741
Query 1739 AAACTAGATGGCTTAAAATTGGACGAACCAGTTGTATTCGCGCAAGATGAAGAA-GTTTT 1797
|||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct 1742 AAACTAGATGGCTTAAAATTGGACGAACCAGTAGTATTCGCGCAAGATGAAGAAAGTTT- 1800
Query 1798 AGGTGAAGATGGGGAAACCTTTTTGGCTAAGCTACACGATTATAATGAAGACTTGAGTCA 1857
|||||||||||||||||||||||||||||||||||||||| | |||||| ||||||||||
Sbjct 1801 AGGTGAAGATGGGGAAACCTTTTTGGCTAAGCTACACGATAACAATGAAAACTTGAGTCA 1860
Query 1858 AAAAGGGGAACTTGTGAATGATTTTTCACGTAAATCGG-GTTCTGAAGCTTTTAATAATG 1916
||||||||||||||||| ||| || ||| ||||| || ||||||||||||| |||| ||
Sbjct 1861 AAAAGGGGAACTTGTGAGTGAAGTTCCACTTAAAT-GGAGTTCTGAAGCTTTAAATAGTG 1919
Query 1917 AGAAAATCA-TGTATAATCCATCCTCATGGACTCCAATGGAGATAGCAACTGCAACAGGC 1975
| ||||||| | |||| ||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 1920 ACAAAATCACT-TATAGTCCATCCTCTTGGACTCCAATGGAGATAGCAACTGCAACTGGT 1978
Query 1976 GACCCAGAGAGAACTACAGTTGAACACGCTCTGGAGCTTAAAAGCACTTACTCAGAAGTG 2035
||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||||
Sbjct 1979 GACCCAGAGAGAACTACGGTTGAACATGCTCTGGAGCTTAAAAGCACATACTCAGAAGTG 2038
Query 2036 GAGGGTCAAGCGAACACAAGAGATGAAAACGGAGAGCCTGTAGTGACCAGTTATCACAGA 2095
||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 2039 GAGGGTCAAGCAAACACAAGGGATGAAAACGGAGAACCTGTAGTGACCAGTTATCACAGA 2098
Query 2096 TGTTTCATGGGGACAGTTGACTACATATGGCGGTCGGAAGCCCTTCAGACGGTTCGTGTG 2155
|||||||||||||||||||||||||||||||||||||||| ||||| || || ||||||
Sbjct 2099 TGTTTCATGGGGACAGTTGACTACATATGGCGGTCGGAAGGTCTTCAAACAGTGCGTGTG 2158
Query 2156 CTTGCTCCAATACCGAAA-CAAGCAATGCAGTGGACACCAGGCTTCCCGACTCCAAAATG 2214
|||||||||||||| ||| ||||||||||||||||| ||||||||||||||||| |||||
Sbjct 2159 CTTGCTCCAATACC-AAAGCAAGCAATGCAGTGGACTCCAGGCTTCCCGACTCCTAAATG 2217
Query 2215 GGGAAGCGATCACATTGCATTGGTTTCAGAGTTGGCCTTTTGTACCAGCAAGAGTCCGCC 2274
||||||||||||||||||| ||||||||||||||||||| || | |||||| | || |||
Sbjct 2218 GGGAAGCGATCACATTGCACTGGTTTCAGAGTTGGCCTTCTGCAGCAGCAAAACTCTGCC 2277
Query 2275 TAAAGGCTGATATTAAACAGGTGGT 2299
||| ||||||||||||| ||||||
Sbjct 2278 CAAAAGCTGATATTAAACTGGTGGT 2302
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 114356841510
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5