BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg940624
Length=999
Score E
Sequences producing significant alignments: (Bits) Value
AT5G11480.1 | Symbols: | P-loop containing nucleoside triphosp... 1607 0.0
> AT5G11480.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr5:3669193-3671574
REVERSE LENGTH=1217
Length=1217
Score = 1607 bits (870), Expect = 0.0
Identities = 957/999 (96%), Gaps = 6/999 (1%)
Strand=Plus/Plus
Query 4 AGAAGGA-AATCGATCAGATATGATTTTAGCGCAGCTTCCAAGATTCCATCTCTCAATCC 62
|||| || |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 85 AGAA-GAGAATCGATCAGATATGATTTTAGCGCATCTTCCAAGATTCCATCTCTCAATCC 143
Query 63 TCGCGAAACCTTCTTTCGCTCTCTCTTCTTCGCATTTCAATTTCTTAAACCCTAAGCCGT 122
||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| |
Sbjct 144 TCGCGAAACCTTCTTTCTCTCTCTCTTCTTCGCATTTCAGTTTCTTAAACCCTAAGCCTT 203
Query 123 CGGTTGA-AGTAGCTCGAACCCTTTTCTCATTCGCGTCTAAATCCAGTCTCGCCACTGTT 181
||| | | |||| ||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 204 CGG-TAACAGTATCTCGAACCCTTTTCTCATTCGCGTCTAAATCGAATCTCGCCACTGTT 262
Query 182 GAACCCATACCACTATCGGTCTCGGATTCATCCGATTTGGATGATGCTCCTGTCGAGATT 241
|||||||||||| |||||||||| |||||| |||||||||||||||| ||||||||||||
Sbjct 263 GAACCCATACCATTATCGGTCTCAGATTCAACCGATTTGGATGATGCACCTGTCGAGATT 322
Query 242 TCGCTCGACAAGCTTTTTATTCCTCCGGAGACTGATATATCCGGTGAAGACTCGACGAGT 301
|||||||||||||||||||||| |||||||| ||||||||||||||||||||| |||||
Sbjct 323 GCGCTCGACAAGCTTTTTATTCCGCCGGAGACCGATATATCCGGTGAAGACTCGGCGAGT 382
Query 302 CTAACGGCGAGGATACTGAAGGGTTCGAATATAGTGCTGAGCAAGTACGCGAGGGACGCA 361
||||| |||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 383 TTAACGACGAGGATACTTAAGGGTTCGAATATTGTGCTGAGCAAGTACGCGAGGGACGCA 442
Query 362 CAGGTGGTTCAGGCTGATTATGTGAAGAGCAGTGTCAAGACGGAGGATTGTCCGGCCGAT 421
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 443 CAGGTGGTTCAGGCTGATTATGTGAAGAGTAGTGTCAAGACGGAGGATTGTCCGGCCGAT 502
Query 422 GGGTTGCCGGAGTTTGCGCTTGTCGGGAGATCCAATGTTGGGAAATCCTCGCTTCTCAAT 481
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 503 GGGTTGCCGGAGTTTGCGCTTGTTGGGAGATCCAATGTTGGGAAATCATCGCTTCTCAAT 562
Query 482 TCGTTGGTGAGGAGGAAACGCCTTGCTTTGACCTCTAAGAAACCTGGAAAAACGCAATGC 541
|||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||
Sbjct 563 TCGTTGGTGAGGAGGAAACGCCTTGCCTTGACTTCTAAGAAACCTGGAAAGACGCAATGC 622
Query 542 ATTAATCATTTCCGGATCAACGACAAGTGGTACTTGGTAGATTTGCCTGGTTACGGGTAT 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 623 ATTAATCATTTCCGGATCAACGACAAGTGGTACTTGGTAGATTTGCCTGGTTACGGGTAT 682
Query 602 GCATCAGCACCGCATGAACT-AAAGCAAGACTGGAACAAATTCACCAAGGACTATTTCCT 660
|||||||||||||||||||| ||| ||||||||||||||||||||||| |||||||| ||
Sbjct 683 GCATCAGCACCGCATGAACTCAAA-CAAGACTGGAACAAATTCACCAAAGACTATTTTCT 741
Query 661 AAATCGATCAACATTGGTCTCGGTGTTTTTACTAGTTGATGCCAGCATTCCTGTAAAGCC 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 742 AAATCGATCAACATTGGTCTCGGTGTTTTTACTAGTTGATGCCAGCATTCCTGTAAAGCC 801
Query 721 AATCGATCTCGAGTACGCAAGCTGGCTTGGTCAAAACCAGGTTCCAATGACTTTGATATT 780
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 802 AATCGATCTCGAGTATGCAAGCTGGCTTGGTCAAAACCAGGTTCCAATGACTTTGATATT 861
Query 781 CACAAAATGCGACAAGAGAAAGAAGAAGAAAAATGGAGGGAAAAAACCGGAGGAGAACAT 840
|||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 862 CACAAAATGCGACAAGAGAAAGAAGAAGAAAAATGGAGGGAAGAAACCGGAGGCGAACAT 921
Query 841 AAAGGAGTTCCAAGACTTGATCCAAGGGTTCTTTGAGACAACACCACCATGGATTATGAC 900
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 922 AAAGGAGTTCCAAGACTTGATCCAAGGGTTCTTTGAGACAACACCGCCATGGATTATGAC 981
Query 901 CAGCAGTGTGACGAATCAAGGTCGGGACGAGATATTGTTGCATATGGCTCAGCTAAGAAA 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 982 CAGCAGTGTGACGAATCAAGGTCGGGACGAGATATTGTTGCATATGGCTCAGCTAAGAAA 1041
Query 961 CTACTGGCTGAAACACTAAGAACCCAAACCACACTTCTC 999
||||||||| ||||||| |||||| |||| |||||||||
Sbjct 1042 CTACTGGCTCAAACACTGAGAACCAAAACAACACTTCTC 1080
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48928059178
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5