BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg940626
Length=870
Score E
Sequences producing significant alignments: (Bits) Value
AT5G11500.1 | Symbols: | unknown protein; CONTAINS InterPro DO... 1498 0.0
> AT5G11500.1 | Symbols: | unknown protein; CONTAINS InterPro
DOMAIN/s: Protein of unknown function DUF814 (InterPro:IPR008532);
Has 1807 Blast hits to 1807 proteins in 277 species:
Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants
- 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
| chr5:3676579-3679352 FORWARD LENGTH=1222
Length=1222
Score = 1498 bits (811), Expect = 0.0
Identities = 851/870 (98%), Gaps = 3/870 (0%)
Strand=Plus/Plus
Query 1 GAGAGA-GGGGAAACCCTAGATTCGATCTCCATTCGATTTGGTTCGTTTGTCGAATCGAA 59
|||||| |||||||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct 106 GAGAGAGGGGGAAACCCTAGATTCGATCTCCATTCGATTTGATTCGTTTCTCGAATCGAA 165
Query 60 GCGATGGTGTTCTACTTCAAGGCCCGACCGGATGCTGGCGACTACACCATCTTCATGGGG 119
|||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 166 GCGATGGTTTTCTACTTCAAGGCCCGTCCTGATGCTGGCGACTACACCATCTTCATGGGG 225
Query 120 CTTGATAAGTTCGAGAACGAGGAGCTCATCAAGTACGGCTTCCCTGAAGATGTCTGGTTT 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 226 CTTGATAAGTTCGAGAACGAGGAGCTCATCAAGTACGGCTTCCCTGAAGATGTCTGGTTT 285
Query 180 CACGTGGATAAAATGTCGTCAGCTCATGTTTACCTGAGGCTTCACAGAGGCCAAAGTTTT 239
||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct 286 CACGTGGATAAAATGTCGTCAGCTCATGTTTACTTGAGGCTTCATAGAGGCCAAAGTTTT 345
Query 240 GATGACATTAGTGAAGGTGTGCTGGAGGACTGTGCTCAGCTTGTGAAAGCTAACTCCATT 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 346 GATGACATTAGTGAAGGTGTGCTGGAGGACTGTGCTCAGCTTGTGAAAGCTAACTCCATT 405
Query 300 CAAGGCAACAAGGTGAACAACGTTGATGTTGTGTACACTCCGTGGTCCAACTTGAAGAAA 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 406 CAAGGCAACAAGGTGAACAACGTTGATGTTGTGTACACTCCGTGGTCCAACTTGAAGAAA 465
Query 360 ACTGCTTCCATGGATGTTGGTCAAGTTGGTTTCCACAATTCAAAGATGGTCCGGACTATC 419
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 466 ACTGCCTCCATGGATGTTGGTCAAGTTGGTTTCCACAATTCAAAGATGGTCCGGACTATC 525
Query 420 AGAGTGGAGAAGCGAGTCAATGAAATAGTTAACAGATTGAACAAAACAAAAGTTGAAAGA 479
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 526 AGAGTGGAGAAGCGAGTCAATGAAATAGTTAACAGACTGAACAAAACAAAAGTTGAAAGA 585
Query 480 ACTCCTGATCTGAGAGCCGAGAGAGAAGCAGTGAATGCTGCAGAAAGGGCAGAGAGGAAA 539
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 586 ACCCCTGATCTGAGAGCCGAGAGAGAAGCAGTGAATGCCGCAGAAAGGGCAGAGAGGAAA 645
Query 540 CAACATCTGAGGGAGAAGAAGAAACGTGAAGAGATAGATAGGCTTGAGAAGGAGAGGCAA 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 646 CAACATCTGAGGGAGAAGAAGAAACGTGAAGAGATAGATAGGCTTGAGAAGGAGAGGCAA 705
Query 600 TCAGAGATGAGGAGTTACAAGGGACTAATGGTAACTGATAAAATGACATCCAACAAAGAC 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 706 TCAGAGATGAGGAGTTACAAGGGACTAATGGTAACTGATAAAATGACATCCAACAAAGAC 765
Query 660 ATTGCTTCAAGCAACAAATCGCTTCAAGAACTGGAAGACGATTTCATGTAAAAGCTCTGA 719
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 766 ATTGCTTCAAGCAACAAATCGCTTCAAGAACTTGAAGACGATTTCATGTAAAAGCTCTGA 825
Query 720 AGAAATGAGAAA-AAA-CAAACCAAGTCGGTAACATTCTGCCAGAGGTGATCTGGTACCG 777
|||||||||||| ||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 826 AGAAATGAGAAACAAAACAAACCAAGTCGGTAACATTCTGCCAGAGATGATCTGGTACCG 885
Query 778 TCCTTCAAAGAAGGCTTATGATGTTCTACTCGCCTTAATTATGATGTTGATGGTTGTCCG 837
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 886 TCCTTCAAAGAAGGCTTATGATGTTCTACTCGCCTTAACTATGATGTTGATGGTTGTCCG 945
Query 838 GTTTTATGTTTTCTTTCAAAAAATCTTGAA 867
||| |||||||||||| |||||||||||||
Sbjct 946 GTTCTATGTTTTCTTTAAAAAAATCTTGAA 975
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42447854215
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5