BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg940633
Length=1488
Score E
Sequences producing significant alignments: (Bits) Value
AT5G11570.1 | Symbols: | Major facilitator superfamily protein... 2156 0.0
> AT5G11570.1 | Symbols: | Major facilitator superfamily protein
| chr5:3715943-3718276 REVERSE LENGTH=1446
Length=1446
Score = 2156 bits (1167), Expect = 0.0
Identities = 1360/1453 (94%), Gaps = 14/1453 (1%)
Strand=Plus/Plus
Query 23 ATGGATCAAGAAGCTCTTCTCGTCGGAAGAACTACTTC-AAAACGCGGTATTCCGACCAT 81
||||||||||||||||||||||||||||||||| |||| || |||||||||||||||||
Sbjct 1 ATGGATCAAGAAGCTCTTCTCGTCGGAAGAACT-CTTCTGAAGCGCGGTATTCCGACCAT 59
Query 82 TCCTTTCATTCTAGCAAGTCAGGCGTTGGAGAAACTTGCATATTTTGGATTGGTACCGAA 141
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 60 TCCTTTCATTCTAGCAAGTCAGGCTTTGGAGAAACTTGCATATTTTGGTTTGGTACCGAA 119
Query 142 TATGATACTCTTCTTGACGGTGGAATACGGTATGGGAACAGCCGAAGCGGCCAACATCCT 201
||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 120 CATGATACTCTTCTTGACGGTGGAATACGGCATGGGAACAGCGGAAGCGGCCAACATCCT 179
Query 202 ATTCCTCTGGTCCGCCGCCACCAATTTCTTCCCTCTTGTGGGTGCTTTTATTGCTGATTC 261
||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 180 TTTCCTCTGGTCTGCCGCCACCAATTTCTTCCCTCTTGTTGGTGCTTTTATCGCTGATTC 239
Query 262 TTACACGGGTCGGTTTCCTCTGATCGGGTTTGGATCCTCTATCAGCCTTATGGGAATGGT 321
|||||| |||||||||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct 240 TTACACCGGTCGGTTTCCTCTGATCGGGTTTGGATCCTCCATCAGCCTTACGGGAATGGT 299
Query 322 TTTATTATGGCTGACAACACTAATTCGACCAGAATGCGATAAATTAACGAACGTGTGCCA 381
||| ||||||||||||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct 300 TTTGTTATGGCTGACAACAATAATTCGACCAGAATGCGATAAATTAACAAACGTGTGCCA 359
Query 382 ACCCACCACACTGCTCAAAAGTCTTCTCCTATATTCCTTTTTTGCCCTCACCGCCATTGG 441
|||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct 360 ACCCACCACACTGCTCAAAAGTGTTCTTCTATATTCCTTTTTTGCCCTCACCGCCATTGG 419
Query 442 CGCCGGCGGAGTCAGGTCCTCCTGCTTAGCCTTCGCCGCTGACCAGCTTCAACCTAATCA 501
|||||||| || || |||||||||||||||||||| || |||||||| |||||||||||
Sbjct 420 TGCCGGCGGCGTTAGATCCTCCTGCTTAGCCTTCGCTGCCGACCAGCTCCAACCTAATCA 479
Query 502 GACATCACGTGTCGCCATATCAGCCCTAGAAACGCTCTTCAACTGGTACTACTTCTCCGT 561
||||||||||||| ||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct 480 GACATCACGTGTCACCACATCATCCCTAGAAACGCTCTTCAACTGGTACTACTTCTCCGT 539
Query 562 CATGCTAGCATGCTTTCTTTCTCAGTCGTTGCTCGTCTTCGTTCAGACAACATATGGTTG 621
|||| | |||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 540 CATGGTCGCATGCTTTCTTTCTCAGTCTTTGCTCGTCTTCGTTCAGACAACGTATGGTTG 599
Query 622 GAAGATTGGTTTTGGAGTTTCTGTCGCTGCCATGGCTCTATCGGTCGCTTTGTTCTTTGC 681
| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 600 GCAGATCGGTTTTGGAGTTTCTGTCGCTGCCATGGCTCTATCGGTCGCTTTGTTCTTCGC 659
Query 682 GGCTTCTCCATACTATGTAAGGTTT-A-AGTGCGAGTC-CGGCGAGTCACGGAATCCATG 738
||| ||||| ||||||||||||||| | | ||| | ||| | ||| ||||||||||
Sbjct 660 GGCGTCTCCGTACTATGTAAGGTTTCAGAAACCGA--CACGG-AACTCAAGGAATCCATG 716
Query 739 GAAGCTATGTAGGGTTCAACAAGTAGAAGATCTTAAATCTCTCATCAATGTCCTACCCAT 798
||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 717 GAAGCTATGTAGGGTGCAACAAGTAGAAGATCTTAAATCTCTCATCAATGTCATACCAAT 776
Query 799 ATGGTCAACGGGGATCATCTTGTCACTTGTCACAGCTTGCCAAGTCTCCTTCATAGTCCT 858
|||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 777 TTGGTCAACAGGGATCATCTTGTCACTTGTCACGGCTTGCCAAGTCTCCTTCATAGTCCT 836
Query 859 TCAAGCCAAGGCCATGGATCGCCACACCTTTATTCAGGGTTTTGAGATTCCCCCAGGCTC 918
|||||| ||| ||||||||||||||||||| ||||||||||| |||||||| ||||||||
Sbjct 837 TCAAGCTAAGACCATGGATCGCCACACCTTCATTCAGGGTTTCGAGATTCCTCCAGGCTC 896
Query 919 TTACGGCATTTTCTTGGTCATCTCCTTTGTGCTGTTCCTTGGTCTTTATGATCTTGTTAT 978
|||||||||||||||||||||||||||| |||| |||||||||||||| |||||||||||
Sbjct 897 TTACGGCATTTTCTTGGTCATCTCCTTTTTGCTCTTCCTTGGTCTTTACGATCTTGTTAT 956
Query 979 CGTCCCATTACTTTCTTGGGCTCTAAGAAG-GCCCTTTCGATTGGGAGTTATGGCGAGAA 1037
||||||||||||||||||||||||||| || |||||||||||||||||||||| |||||
Sbjct 957 CGTCCCATTACTTTCTTGGGCTCTAAG-AGAACCCTTTCGATTGGGAGTTATGGTGAGAA 1015
Query 1038 TG-GGAGCTGGGTATGTAATATCGGTTATGTGCATCTCCACTCTTGCGGCTGCGGAGTAC 1096
|| || ||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||
Sbjct 1016 TGTGG-GCTGGGTATGTAATATCGGTTTTGTGCATCTCCGCTCTTGCGGCTACGGAGTAC 1074
Query 1097 GCCAGGaaaaaaaTC-GCTAGAGACGAGAGTGGTACCATGTTGTCTGCCATGTGGCTATT 1155
|| |||| ||||| | || ||||||||||||||||||| |||||| || |||||||||||
Sbjct 1075 GCGAGGAGAAAAA-CAGCGAGAGACGAGAGTGGTACCAAGTTGTCGGCGATGTGGCTATT 1133
Query 1156 ACCGTACATGATATTAGGAGGCATTGCGGAAGCACTTAATACAATAGCACAGAACGAGTT 1215
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1134 ACCGTACATGATATTAGGAGGCATTGCGGAAGCACTTAATACAATAGCACAGAACGAGTT 1193
Query 1216 CTTCTACTCTGAACTTCCCAAATCCATGTCAAGCGTCGCCACCACACTCTCCAGCCTCGG 1275
||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 1194 CTTCTACTCAGAACTTCCCAAAACCATGTCAAGCGTCGCCACCACACTCTCCAGTCTCAA 1253
Query 1276 CATGGCCGCAGCAAGCCTCATCTCCTCCTGGATCATCACCATCGTTGACGTCACCACTTA 1335
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1254 CATGGCCGCAGCAAGCCTCATCTCCTCCTGGATCATCACCATCGTTGACGTTACCACTTA 1313
Query 1336 CGGGAGCTGGATCACAGAGAATATAGACGAGGGACACTTGGACTATTACTACTGGCTCTT 1395
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1314 CGGGAGCTGGATCACAGAGAATATAGACGAGGGACACTTGGACTATTACTACTGGCTCTT 1373
Query 1396 GGTAGGATTATCTGTGCTCAATGTTCTGTATTTTGTGTGGTGTAAGAAATCTTATGGTAA 1455
||| ||||||||| |||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct 1374 GGTGGGATTATCTTTGCTGAATGTTTTGTATTTTGTGTGGTGTAAGAAATCTTATGGTAA 1433
Query 1456 ATGTAGTATATAA 1468
|||||||||||||
Sbjct 1434 ATGTAGTATATAA 1446
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73393196790
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5