BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg940641

Length=324
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G11630.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   516    6e-146


> AT5G11630.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; 
EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT4G17310.1); 
Has 90 Blast hits to 90 proteins in 10 species: Archae - 0; 
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 90; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr5:3740460-3742139 
FORWARD LENGTH=653
Length=653

 Score =  516 bits (279),  Expect = 6e-146
 Identities = 309/324 (95%), Gaps = 0/324 (0%)
 Strand=Plus/Plus

Query  1    TTCGTTTCGTTTATCCGACAAAATGGCTTCTCGATGTCGATCTTTGTCGAAACCAGCGTT  60
            |||||||||||| |||| |||||||||||| ||||||||||||||||| |||||||||||
Sbjct  64   TTCGTTTCGTTTTTCCGGCAAAATGGCTTCACGATGTCGATCTTTGTCAAAACCAGCGTT  123

Query  61   GTCTGTGTTTAGATCTGCAATGAACAAGCCCTCTCTCCGACCCAAATCGGCTTCATCATT  120
             |||| |||||||||||||||||||||||| ||| | || ||||||||||||||||||||
Sbjct  124  TTCTGCGTTTAGATCTGCAATGAACAAGCCATCTATTCGTCCCAAATCGGCTTCATCATT  183

Query  121  CCTCGGCGTCCCTCCTTCGCCTGGACTTTCGAGGCCAATTGCTCAGCTGGGTTCGCTTCA  180
            | ||||||||||||||||||||||| |||||||||| |||| ||||||||||||||||||
Sbjct  184  CATCGGCGTCCCTCCTTCGCCTGGATTTTCGAGGCCGATTGGTCAGCTGGGTTCGCTTCA  243

Query  181  ATCGTTGCTTCCATTGTACAGTGCGGTGGCTTCAGCTAGATTGACTTCGTGCCTTGGTAT  240
            |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct  244  ATCGTTGCTTCCATTGTACAGTGCGGTGGCTTCAGCTAGATTGACTTCGTGCCTGGGTAT  303

Query  241  CGATTCACAGAATTCTAGGTCATTAGCTCAGGGTATGCTCTGCAGTGCGAATCCAGGAGT  300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  304  CGATTCACAGAATTCTAGGTCATTAGCTCAGGGTATGCTCTGCAGTGCGAATCCAGGAGT  363

Query  301  TTGATATTCTTCCAAATGTTTTGT  324
            ||||||||||||||||||||||||
Sbjct  364  TTGATATTCTTCCAAATGTTTTGT  387



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15080324700


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5