BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg940645 Length=568 Score E Sequences producing significant alignments: (Bits) Value AT5G07950.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 311 5e-84 > AT5G07950.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 9 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:2540284-2542136 REVERSE LENGTH=1247 Length=1247 Score = 311 bits (168), Expect = 5e-84 Identities = 198/212 (93%), Gaps = 3/212 (1%) Strand=Plus/Plus Query 358 AGAAGATGGCTGAGGAGTTTGTGGAGATGTTCATACGCGAAGTAATGATAAAGGGATTGC 417 ||||||||||||||||| ||||||||||||||| ||||||||||||| ||||| |||||| Sbjct 628 AGAAGATGGCTGAGGAGCTTGTGGAGATGTTCAAACGCGAAGTAATGCTAAAGAGATTGC 687 Query 418 TCATAATGGAACTTATCTCTTTAAGCACTGAAGTTCCTCAACCCATCAACAACAGTTGGT 477 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 688 TCATAATGGAACTGATCTCTTTAAGCACTGAAGTTCCTCAACCCATCAACAACAGTTGGT 747 Query 478 TAGATGAGCTTTACCATGGGGAATTT-ATCACATCTCACCAAATGTTCTTTCTATTCCAT 536 |||||||||||||||||| |||||| |||| |||||||||||||||||| ||||| || Sbjct 748 CAGATGAGCTTTACCATGGAGAATTTGATCA--TCTCACCAAATGTTCTTTATATTCTAT 805 Query 537 GGAAGTAGCTGAGCCAGTTCTCCCTAGAGTGA 568 |||||||||| ||||||||||||| ||||||| Sbjct 806 GGAAGTAGCTAAGCCAGTTCTCCCCAGAGTGA 837 Score = 196 bits (106), Expect = 1e-49 Identities = 122/130 (94%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 41 GTATATGCCAATGATGGAGCTTGGTGTGTTGAGTGACATGTTTGATATCAAGAAGAACGC 100 ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| || Sbjct 335 GTATATGCCAATGATGGAGCTTGGTGTGTTGAGTGACATGTTTGATATCGACAAGAAAGC 394 Query 101 TTTGAAGAAGCTGTCTAAGCAACAGAGTGCTTATCGAATCAAGCTTTTATCGTCGTACAA 160 |||||||||||||| || |||||||||| | |||||||||||||||||||| |||||||| Sbjct 395 TTTGAAGAAGCTGTTTACGCAACAGAGTTCCTATCGAATCAAGCTTTTATCTTCGTACAA 454 Query 161 GGAAATGGTA 170 |||||||||| Sbjct 455 GGAAATGGTA 464 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 27277141821 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5