BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg940645
Length=568
Score E
Sequences producing significant alignments: (Bits) Value
AT5G07950.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 311 5e-84
> AT5G07950.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures;
EXPRESSED DURING: 9 growth stages; Has 30201 Blast hits
to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396;
Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses -
0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:2540284-2542136
REVERSE LENGTH=1247
Length=1247
Score = 311 bits (168), Expect = 5e-84
Identities = 198/212 (93%), Gaps = 3/212 (1%)
Strand=Plus/Plus
Query 358 AGAAGATGGCTGAGGAGTTTGTGGAGATGTTCATACGCGAAGTAATGATAAAGGGATTGC 417
||||||||||||||||| ||||||||||||||| ||||||||||||| ||||| ||||||
Sbjct 628 AGAAGATGGCTGAGGAGCTTGTGGAGATGTTCAAACGCGAAGTAATGCTAAAGAGATTGC 687
Query 418 TCATAATGGAACTTATCTCTTTAAGCACTGAAGTTCCTCAACCCATCAACAACAGTTGGT 477
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 688 TCATAATGGAACTGATCTCTTTAAGCACTGAAGTTCCTCAACCCATCAACAACAGTTGGT 747
Query 478 TAGATGAGCTTTACCATGGGGAATTT-ATCACATCTCACCAAATGTTCTTTCTATTCCAT 536
|||||||||||||||||| |||||| |||| |||||||||||||||||| ||||| ||
Sbjct 748 CAGATGAGCTTTACCATGGAGAATTTGATCA--TCTCACCAAATGTTCTTTATATTCTAT 805
Query 537 GGAAGTAGCTGAGCCAGTTCTCCCTAGAGTGA 568
|||||||||| ||||||||||||| |||||||
Sbjct 806 GGAAGTAGCTAAGCCAGTTCTCCCCAGAGTGA 837
Score = 196 bits (106), Expect = 1e-49
Identities = 122/130 (94%), Gaps = 0/130 (0%)
Strand=Plus/Plus
Query 41 GTATATGCCAATGATGGAGCTTGGTGTGTTGAGTGACATGTTTGATATCAAGAAGAACGC 100
||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||
Sbjct 335 GTATATGCCAATGATGGAGCTTGGTGTGTTGAGTGACATGTTTGATATCGACAAGAAAGC 394
Query 101 TTTGAAGAAGCTGTCTAAGCAACAGAGTGCTTATCGAATCAAGCTTTTATCGTCGTACAA 160
|||||||||||||| || |||||||||| | |||||||||||||||||||| ||||||||
Sbjct 395 TTTGAAGAAGCTGTTTACGCAACAGAGTTCCTATCGAATCAAGCTTTTATCTTCGTACAA 454
Query 161 GGAAATGGTA 170
||||||||||
Sbjct 455 GGAAATGGTA 464
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27277141821
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5