BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg940647
Length=668
Score E
Sequences producing significant alignments: (Bits) Value
AT5G11680.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 1064 0.0
> AT5G11680.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cytosol, plasma membrane; EXPRESSED IN: 26 plant structures;
EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s:
WW-domain-binding protein (InterPro:IPR018826); Has 1807
Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria
- 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses
- 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:3758858-3760851
FORWARD LENGTH=1039
Length=1039
Score = 1064 bits (576), Expect = 0.0
Identities = 634/662 (96%), Gaps = 3/662 (0%)
Strand=Plus/Plus
Query 1 TTGATCAATCTGAACTGCAGTTCATGGCGCTAAACCCTCAATTGCTAACCAATGGGATAC 60
|||||||||||||| |||||||||||||||||||||||||||| ||| |||||||||| |
Sbjct 176 TTGATCAATCTGAATTGCAGTTCATGGCGCTAAACCCTCAATTACTACCCAATGGGATGC 235
Query 61 CTATTCCCTTTGTTAATGAAATGTTCGTTCTAGTCAGAGATGGTGTTGAGTTTGAGGTCG 120
|| ||||||||||||||||||||||||| |||||| ||||||||||||||||||| ||||
Sbjct 236 CTGTTCCCTTTGTTAATGAAATGTTCGTCCTAGTCCGAGATGGTGTTGAGTTTGAAGTCG 295
Query 121 ACAAGATCCCTGGAGGGCATGGAGGTCATGTTAAGGCTAAGGGAGTGATTTACTTGTCTA 180
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 296 ACAAGATCCCTGGAGGGCATGGAGGTCATGTTAAGGCCAAGGGGGTGATTTACTTGTCTA 355
Query 181 ATATACGGATGGTCTTTGTTGCTAGCAAGCCTGTTGACAACTTTGTTGCTTTTGACATGC 240
|||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 356 ATATACGGATGGTCTTTGTTTCAAGCAAGCCTGTTGACAACTTTGTTGCTTTTGACATGC 415
Query 241 CCCTGCTTTACATTCATGCCGAGAAATTCAATCAGCCAATATTTCACTGCAACAATATCT 300
||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 416 CCCTGCTTTACATCCATGCCGAGAAATTTAATCAGCCAATATTTCACTGCAACAATAT-T 474
Query 301 -CTGGACAAGTGGAGCCTGTGGTGCCAGAAAACGAGCATAGAGCTCTATATTCAACACAC 359
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 475 GCTGGACAAGTGGAGCCTGTGGTGCCAGAAAATGAGCATAGAGCTCTATATTCAACACAC 534
Query 360 AGTTTCAAGATCCTATTTAAGGAAGGTGGTTGCGGGACATTTGTTCCTCTCTTCTTGAAT 419
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 535 AGTTTCAAGATCCTATTTAAGGAAGGTGGTTGTGGGACATTTGTTCCTCTCTTCTTGAAT 594
Query 420 CTCATATCATCAGTGAGACAATACAATAGACAAATGCAACAAGCAGCAGAAGCAGCAGCG 479
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 595 CTCATATCATCAGTGAGACAATACAACAGACAAATGCAACAAGCAGCAGAAGCAGCAGCG 654
Query 480 GCAGCTCCACGTGTTGATCCTCTTCAAGCCGCTCAGACCCCTGTAGACGAAATGATGAGA 539
|||||||| | ||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 655 GCAGCTCCTCATGTTGATCCTCTTCAAGCCGCTCAGACACCTGTGGACGAAATGATGAGA 714
Query 540 CATGCGTACGTGGACCCTAATGATCCAACGAGGATATATTTGCAGCAGCCATCAGGGGAA 599
||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct 715 CATGCGTACGTGGACCCTAATGATCCAACGAGGATATATCTGCAACAGCCATCAGGGGAA 774
Query 600 TCTCAGTTGAGGCGGAGAGCTTACCATTCGGGTGCAGCGGAACATTGAGATACACG-AAA 658
|||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 775 TCTCAGTTGAGGCGTAGAGCTTACCATTCGGGTGCGGCGGAACATTGAGATACACGGAAA 834
Query 659 AA 660
||
Sbjct 835 AA 836
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32300556521
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5