BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg940648

Length=437
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G11690.1 | Symbols: ATTIM17-3, TIM17-3 | translocase inner m...   425    1e-118


> AT5G11690.1 | Symbols: ATTIM17-3, TIM17-3 | translocase inner 
membrane subunit 17-3 | chr5:3761244-3762346 FORWARD LENGTH=856
Length=856

 Score =  425 bits (230),  Expect = 1e-118
 Identities = 360/421 (86%), Gaps = 15/421 (4%)
 Strand=Plus/Plus

Query  21   ATGGACACCCAGAAGAAATCTGAGGAACATGGCCTTTACCATATAGTCAATAG-TACCGG  79
            ||||||||  ||||||||||| ||||||||||||| |||| |||||||||| | || |||
Sbjct  269  ATGGACACTAAGAAGAAATCTAAGGAACATGGCCTATACCGTATAGTCAAT-GCTATCGG  327

Query  80   TGGTGCATTTGGAGCGGGCGCTGTTGGAGGTTCTGTATATCATTTCATAAAAGGGTCATA  139
            |  ||||||||||||||| ||||||||||||||||||||||||||| | | |||| ||||
Sbjct  328  TTATGCATTTGGAGCGGGAGCTGTTGGAGGTTCTGTATATCATTTCGTGAGAGGGGCATA  387

Query  140  CAATTCCCCAATAGGTGCTCGTTTTGTTGGAGGAACACAAGCGG-TGACCATGAACGCTC  198
            ||||||||||||||||||||| | |||||||||||||||||||| | | |||||| ||||
Sbjct  388  CAATTCCCCAATAGGTGCTCGATATGTTGGAGGAACACAAGCGGCT-AGCATGAATGCTC  446

Query  199  CTCGTTTGGGAGGCAGTTTTGCTGCATTTGGAGGATTGTTTTCCACATTTGACTACGCAA  258
            |||| |||||||||| |||||||| ||||||||||||| | || ||||||||||| ||| 
Sbjct  447  CTCGCTTGGGAGGCACTTTTGCTGTATTTGGAGGATTGCTCTCAACATTTGACTATGCAT  506

Query  259  TGGTGTGCATCAGGAAGAAGGAAGATCCATGGAACTCGATCGTAGCAGGTGCTGCTACAG  318
            ||||| ||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct  507  TGGTGCGCATCAGGAAGAAGGAAGATCCATGGAACTCCATCGTAGCGGGTGCTGCTACAG  566

Query  319  GAGGACTTCT-TGCAATGCGACGTGGGATTGTTGCAGCTTCAACATCAGCGGTTATGGTA  377
            | ||| |||| | | || |||   ||| ||||||||||||||||||||||||||||| | 
Sbjct  567  GTGGAGTTCTGT-CTATCCGAAAAGGGGTTGTTGCAGCTTCAACATCAGCGGTTATGTTT  625

Query  378  GGGGTTTTGTTTG-CTTTGA-TGAAAGGGCCTGCGTT-GTGAACAAGTAAGCTTTTCTGG  434
            ||  |||| |||| || | | | ||    ||| |||| | || ||||||||||||| |||
Sbjct  626  GGTTTTTT-TTTGGCTGT-ACTCAAC---CCTCCGTTCGGGAGCAAGTAAGCTTTT-TGG  679

Query  435  G  435
            |
Sbjct  680  G  680



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20760580337


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5