BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg940650

Length=508
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G56170.1 | Symbols: CAN | Ca-2+ dependent nuclease | chr3:20...   327    5e-89
  AT5G05140.1 | Symbols:  | Transcription elongation factor (TFII...   316    1e-85


> AT3G56170.1 | Symbols: CAN | Ca-2+ dependent nuclease | chr3:20842145-20844476 
FORWARD LENGTH=1440
Length=1440

 Score =  327 bits (177),  Expect = 5e-89
 Identities = 198/208 (95%), Gaps = 2/208 (1%)
 Strand=Plus/Plus

Query  258   ATAGATTCACCGGAGAGCAAAATGTCGTATGGAAAAGAGGCACACGATGAGCTACTCAAT  317
             |||||||||||||||||||||||| |||||||||||||||| || |||||||||||||| 
Sbjct  960   ATAGATTCACCGGAGAGCAAAATGCCGTATGGAAAAGAGGCGCATGATGAGCTACTCAAG  1019

Query  318   ATGGTTGAAGGGAAATGCTTGAAGATGTTAGTTTATACAGAGGATCGTTATGGAAGACGT  377
             |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| ||
Sbjct  1020  ATGGTTGAAGGGAAATGCTTGAAGGTGTTAGTATATACAGAGGATCGTTATGGAAGATGT  1079

Query  378   GTAGGAGATATATACTGCAATGGAAAATTTGTACAGGAAGTAATGCTAAAGAAAGGTCTT  437
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1080  GTAGGAGATATATACTGCAATGGAAAATTTGTACAGGAAGTAATGCTAAAGAAAGGTCTT  1139

Query  438   GTCT-GGCATTATGTAGCCTACGACAAG  464
             | || |||||||||||||||| ||||||
Sbjct  1140  G-CTTGGCATTATGTAGCCTATGACAAG  1166


> AT5G05140.1 | Symbols:  | Transcription elongation factor (TFIIS) 
family protein | chr5:1519913-1522667 FORWARD LENGTH=2121
Length=2121

 Score =  316 bits (171),  Expect = 1e-85
 Identities = 218/239 (91%), Gaps = 9/239 (4%)
 Strand=Plus/Plus

Query  11   TCATGCGATCATGGTGGCTGCTACTGATTGTCCTAACAAATTCAAATCCATAGGAGACAA  70
            |||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct  521  TCATGCGATCATGGTGGCTGCTACTGATTGTCCTAACAAATTCAAATCCAGAAGAGACAA  580

Query  71   ATTCGCCCAGCTTTTATTCTCCTGCAGAGTGGGTCGTTGCATCGGATGCGACCATCTTGA  130
            | ||||| |||||||||||||||| ||||||  ||||||| |||||||||||||||||||
Sbjct  581  AATCGCCGAGCTTTTATTCTCCTGTAGAGTGAATCGTTGCGTCGGATGCGACCATCTTGA  640

Query  131  ATTGTCTGTTCCCGGAGACGACGAGGCTAATCGCGGCCGTGGAACCACCGGTGACGGCGG  190
            |||||||||||||||||||||||||||||| | ||    ||||||||||||  | || ||
Sbjct  641  ATTGTCTGTTCCCGGAGACGACGAGGCTAA-C-CG----TGGAACCACCGGAAATGGTGG  694

Query  191  TGGTGGTACGGCGGTTGATGAAGATTATGAGGTTG--G-TGGTAGTAAAGAGAGCAAAG  246
            |||||||||||||||||||||||||||||||||||  | ||||||||||||||||||||
Sbjct  695  TGGTGGTACGGCGGTTGATGAAGATTATGAGGTTGCTGGTGGTAGTAAAGAGAGCAAAG  753



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24263093001


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5