BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg940652
Length=2761
Score E
Sequences producing significant alignments: (Bits) Value
AT5G11720.1 | Symbols: | Glycosyl hydrolases family 31 protei... 4313 0.0
> AT5G11720.1 | Symbols: | Glycosyl hydrolases family 31 protein
| chr5:3776814-3780146 FORWARD LENGTH=2856
Length=2856
Score = 4313 bits (2335), Expect = 0.0
Identities = 2619/2756 (95%), Gaps = 19/2756 (1%)
Strand=Plus/Plus
Query 1 GTCCAACACCAAAATAAAAAATGTCATCTCTTCACTGGTTTCCCAATTTCTTCATCGTTT 60
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 7 GTCCAACACCAAAATAAAAAATGTCATCTCTTCACTGGTTTCCCAATATCTTCATCGTTG 66
Query 61 TCGTCGTCTTCTTCTCCTCACATGGAAGCGGAAGCTCACAAGTTGTACTAGAAGAAGAAG 120
|||||||||||||||||| | | | |||| |||||||||||||||||||||||||
Sbjct 67 TCGTCGTCTTCTTCTCCT----T-G-A---GAAGTTCACAAGTTGTACTAGAAGAAGAAG 117
Query 121 AAGCCACAGTCGTTGGATACGGCTACGTCGTTAGATCAGTGGCCGTTGATTCTAACCGGC 180
|| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 118 AATCCACAGTCGTTGGATACGGCTACGTCGTTAGATCAGTGGGCGTTGATTCTAACCGGC 177
Query 181 AAGTTTTGACGGCGAAGCTTGATCTGATAAAACCATCGTCCGTTTACGCACCAGATATTA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 AAGTTTTGACGGCGAAGCTTGATCTGATAAAACCATCGTCCGTTTACGCACCAGATATTA 237
Query 241 AATCGC-TAAGTCTTCATGTCAGCTTGGAGACGAGTGAGCGTTTGAGAATCAGAATCACA 299
|||||| ||| ||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 238 AATCGCTTAA-TCTTCATGTCAGCTTGGAGACAAGTGAGCGTTTGAGAATCAGAATCACA 296
Query 300 GATTCTAGTCAACAAAGATGGGAGATACCGGAAACCGTTATTCCTCGTGCCGGAAACCAC 359
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 GACTCTAGTCAACAAAGATGGGAGATACCGGAAACCGTTATTCCTCGTGCCGGAAACCAC 356
Query 360 TCTCCTCGCCGTTTCTTAACGGAGGAAGACGGAGGAAAATCGT-CGGAGAACAATTTCTT 418
|||||||||||||||| ||||||||||||||||||||| || | ||||||||||||||||
Sbjct 357 TCTCCTCGCCGTTTCTCAACGGAGGAAGACGGAGGAAACTC-TCCGGAGAACAATTTCTT 415
Query 419 AGCAGATCCTTCATCGGACTTAGTTTTCACACTCCACAACACGACGCCGTTCGGTTTCTC 478
||||||||| ||||||||||| |||||||| |||||||||||||||||||| ||||||||
Sbjct 416 AGCAGATCCCTCATCGGACTTGGTTTTCACTCTCCACAACACGACGCCGTTTGGTTTCTC 475
Query 479 CGTCTCCCGACGCTCCTCCGGCGATATCCTCTTCGACACATCGCC-GAATCAATCAGATT 537
|||||||||||| |||||||||||||||||||||||||||||||| || || ||||||||
Sbjct 476 CGTCTCCCGACGTTCCTCCGGCGATATCCTCTTCGACACATCGCCGGATTC-ATCAGATT 534
Query 538 CAAACACTTACTTCGTCTTCAAAGACCAATTCCTTCAACTATCTTCCGCGTTACCGGAAA 597
|||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 535 CAAACACTTACTTCATCTTCAAAGACCAATTCCTTCAACTATCATCCGCGTTACCGGAAA 594
Query 598 ACAGATCGAATCTGTACGGTCTCGGAGAGCACACGAAGCGATCGTTCAAGCTAATTTCCG 657
||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |||
Sbjct 595 ACAGATCGAATCTGTACGGAATCGGAGAGCACACGAAGCGATCGTTCAGGCTAATTCCCG 654
Query 658 GTGATACAATGACTCTGTGGAACGCCGACATCGGCAGCGAGAATCCGGATGTTAACCTTT 717
|||| || |||||| ||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 655 GTGAGACCATGACTTTGTGGAACGCCGACATCGGCAGCGAAAATCCGGATGTCAACCTTT 714
Query 718 ACGGATCGCACCCGTTTTACATGGATGTAAGAGGATCAAACGGCCATGAAGAAGCAGGGA 777
|||||||||||||||||||||||||||||||||||||||| || | || ||||||||||
Sbjct 715 ACGGATCGCACCCGTTTTACATGGATGTAAGAGGATCAAAGGGAAACGAGGAAGCAGGGA 774
Query 778 CGACTCACGGCGTTTTGTTGCTGAACAGCAATGGAATGGATGTGAAGTATGAAGGACATC 837
||||||| || ||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 775 CGACTCATGGGGTTCTCTTGCTGAACAGCAATGGAATGGATGTGAAGTATGAAGGACATC 834
Query 838 GGATTACTTACAATGTGATTGGAGGCGTAATTGATCTCTATGTGTTCACCGGACCATCGC 897
|||| ||||||||||||||||||||||| |||||||||||||||||| | ||||||||||
Sbjct 835 GGATAACTTACAATGTGATTGGAGGCGTCATTGATCTCTATGTGTTCGCGGGACCATCGC 894
Query 898 CAGAGATGGTGATGAATCAGTACACTGAGCTTATTGGAAGACCTGCCCCTATGCCTTACT 957
| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 895 CGGAGATGGTCATGAATCAGTACACTGAGCTTATTGGAAGACCTGCCCCTATGCCTTACT 954
Query 958 GGTCATTTGGATTTCACCAGTGTAGGTATGGGTACAAGAATGTTTCAGACCTTGAATCTG 1017
||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||| ||
Sbjct 955 GGTCATTTGGATTTCACCAATGTAGATATGGGTACAAGAATGTATCAGACCTTGAATATG 1014
Query 1018 TAGTTGATGGATATGCAAAAGCTGGAATACCTCTTGAGGTTATGTGGACTGACATTGATT 1077
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1015 TAGTTGATGGATATGCAAAAGCTGGAATACCTCTTGAGGTGATGTGGACTGACATTGATT 1074
Query 1078 ACATGGATGGCTACAAAGACTTCACTTTGGATCCCGTGAATTTCCCGGAGGACAAGATGA 1137
|||||||||| ||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 1075 ACATGGATGGGTACAAAGACTTCACTTTGGATCCTGTAAATTTCCCGGAGGACAAGATGC 1134
Query 1138 AATCATTTGTCGATACACTTCACAAGAGCGGTCAGAAATACGTGCTGATCTTGGATCCCG 1197
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1135 AATCATTTGTCGATACACTTCACAAGAATGGTCAGAAATACGTGCTGATCTTGGATCCCG 1194
Query 1198 GTATTGGTGTGGATAGCTCTTACGGGACCTATAACAGAGGAATGGAAGCGGATGTTTTCA 1257
|||||||||||||||||||||| ||||| ||||| |||||||||||||| ||||||||||
Sbjct 1195 GTATTGGTGTGGATAGCTCTTATGGGACATATAATAGAGGAATGGAAGCTGATGTTTTCA 1254
Query 1258 TCAAAAGAAATGGTGAGCCTTATCTCGGTGAGGTTTGGCCCGGGAAAGTATACTACCCCG 1317
| ||||||||||||||||||||||| ||||||||||||||||| |||||||||| |||||
Sbjct 1255 TAAAAAGAAATGGTGAGCCTTATCTTGGTGAGGTTTGGCCCGGAAAAGTATACTTCCCCG 1314
Query 1318 ACTTCTTGAATCCAGCTGCTGCAACTTTCTGGAGCAACGAAATCAAGATGTTCCAGGACA 1377
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1315 ACTTCTTGAATCCAGCTGCTGCAACTTTCTGGAGCAACGAAATCAAGATGTTCCAGGAGA 1374
Query 1378 TTCTCCCTTTGGATGGTCTGTGGATTGACATGAATGAGTTATCAAATTTCATAACTTCAC 1437
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1375 TTCTCCCTTTGGATGGTCTGTGGATTGACATGAATGAGTTATCAAATTTCATAACTTCGC 1434
Query 1438 CTCTATCCCCTGAATCTTCACTCGATGATCCTCCTTACAAGATCAACAATTCAGGGGACA 1497
|||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1435 CTCTATCCTCTGGATCTTCACTCGATGATCCTCCTTACAAGATCAACAATTCAGGGGATA 1494
Query 1498 AAAGACCGATAAACAATAAGACAGTACCCGCAACATCTATCCATTTTGGAAACGTTAGTG 1557
|||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1495 AAAGGCCGATAAACAATAAGACAGTACCCGCAACATCTATCCATTTTGGAAACATTAGTG 1554
Query 1558 AATACGATGCGCATAACTTGTATGGGCTCTTGGAAGCTAAAGCCACTCACCAAGCTGTGG 1617
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555 AATACGATGCGCATAACTTGTATGGGCTCTTGGAAGCTAAAGCCACTCACCAAGCTGTGG 1614
Query 1618 TGGATATAACAGGAAAGAGACCGTTTATTTTGTCGAGATCCACGTTTGTAAGCTCGGGGA 1677
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1615 TGGATATAACGGGAAAGAGACCGTTTATTTTGTCAAGATCCACGTTTGTAAGCTCGGGGA 1674
Query 1678 AATACACGGCTCACTGGACTGGTGATAATGCTGCAAAATGGGAGGATTTGGCTTATTCAA 1737
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1675 AATACACGGCTCACTGGACTGGTGATAATGCTGCAAAATGGGAGGATTTGGCTTACTCAA 1734
Query 1738 TCCCCGGAATCCTCAATTTTGGTCTATTTGGGATTCCAATGGTTGGAGCTGATATCTGCG 1797
|||||||||||||||| ||||| || ||||||||||||||||||||||||||||| |||
Sbjct 1735 TCCCCGGAATCCTCAACTTTGGCCTGTTTGGGATTCCAATGGTTGGAGCTGATATTTGC- 1793
Query 1798 GGTTT-TCACATGATACCACCGAGGAATTATGCCGTCGATGGATCCAGCTTGGAGCTTTT 1856
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1794 GGTTTCTCACATGATACCACCGAGGAATTATGCCGTCGATGGATCCAGCTTGGAGCTTTT 1853
Query 1857 TACCCTTTTGCAAGAGACCATTCGTCCCTTGGTACCGCCAGACAAGAACTATACCTCTGG 1916
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1854 TACCCTTTTGCAAGAGACCATTCGTCCCTTGGTACCGCCAGACAAGAACTATACCTCTGG 1913
Query 1917 GATTCGGTTGCTTCTTCTGCAAGAAAGGTTCTCGGCCTCCGTATGAGATTGCTCCCACAT 1976
||||| ||||||||||||||||||||||||||||||||| | |||||| |||||||||||
Sbjct 1914 GATTCAGTTGCTTCTTCTGCAAGAAAGGTTCTCGGCCTCAGAATGAGACTGCTCCCACAT 1973
Query 1977 CTCTACACATTGATGTACGAGGCCCATGTCAGCGGCAACCCGATCGCGCGACCACTCTTC 2036
||||||||||||||||| ||||| ||||||||||||||||| |||||||| || ||||||
Sbjct 1974 CTCTACACATTGATGTATGAGGCTCATGTCAGCGGCAACCCAATCGCGCGCCCGCTCTTC 2033
Query 2037 TTCTCATTTCCTCGAGACACTAAAACCTATGACATTGATTCCCAGTTCTTGATTGGTAAA 2096
||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2034 TTCTCATTTCCTCAAGACACTAAAACCTATGAGATTGATTCCCAGTTCTTGATTGGTAAA 2093
Query 2097 AACATAATGGTTTCTCCTGCGCTGAAGCAAGGGACGGTGGCTGTGGATGCATATTTCCCT 2156
| ||||||||||||||| ||||||||||||||| |||| || ||||||||||||||||||
Sbjct 2094 AGCATAATGGTTTCTCCAGCGCTGAAGCAAGGGGCGGTAGCAGTGGATGCATATTTCCCT 2153
Query 2157 GCTGGAAACTGGTTCGATCTTTTTAACTATTCCTTTGCCGTTGGTGGAGATTCTGGCAAG 2216
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2154 GCTGGAAATTGGTTCGATCTTTTTAACTATTCCTTTGCCGTTGGTGGAGATTCTGGCAAG 2213
Query 2217 CACTTTAGGCTTGATACTCCCGCTGATCACGTCAACGTTCATGTTCGAGAAGGTAGCATT 2276
||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2214 CACGTTAGACTTGATACTCCCGCTGATCACGTCAACGTTCATGTTCGAGAAGGTAGCATT 2273
Query 2277 GTGGCTATGCAAGGAGAGGCATTGACGACTAGGGACGCCAGAAAGACACCGTATCAGCTT 2336
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2274 GTGGCTATGCAAGGAGAGGCATTGACGACTAGGGACGCCAGAAAGACACCGTATCAGCTT 2333
Query 2337 CTAGTTGTAGCCAGCCGGCTTGAGAACATCTCCGGTGAACTGTTTCTCGATGACGGAGAA 2396
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 2334 CTAGTTGTAGCCAGCCGGCTTGAGAACATCTCCGGCGAACTGTTTCTTGATGACGGAGAA 2393
Query 2397 AACGTACGGATGGGAGCTGGAGGAGGAAACCGTGATTGGACCCTCGTGAAGTTCCGGTGC 2456
|| |||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 2394 AATTTACGGATGGGAGCTGGAGGAGGAAACCGTGATTGGACCCTTGTTAAGTTCCGGTGC 2453
Query 2457 T-TCGTGACAGGAAAATCCGTGGTACTGAGATCAGAAGTGGTGAACCCAGAGTACGCGTC 2515
| | ||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 2454 TAT-GTGACCGGAAAATCCGTTGTACTGAGATCAGAAGTGGTGAACCCAGAGTATGCGTC 2512
Query 2516 GAAAATGAGATGGAGCATCGAGAAAGTGACGTTTGTTGGGTTCGAGAACGTAGAGAGCGT 2575
|||||||| ||||||||||| |||||||||||||||||||||||||||||| |||| |||
Sbjct 2513 GAAAATGAAATGGAGCATCGGGAAAGTGACGTTTGTTGGGTTCGAGAACGTGGAGAACGT 2572
Query 2576 GAAAACGTACGAGGTTAGGACAAGTGAGAGATTAAGGAGTCCGAGAATCTCTCTAATTAA 2635
||||||||||||||||||||||||||||||||| |||||||| ||||||||||| || ||
Sbjct 2573 GAAAACGTACGAGGTTAGGACAAGTGAGAGATTGAGGAGTCCTAGAATCTCTCTTATAAA 2632
Query 2636 GACGGTTTTGGACAATGATGATCCGAGGTTTCTCAGTGTGGAGGTTTCTAAACTGTCGTT 2695
|||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2633 GACGGTTTCGGACAATGATGATCCGAGGTTTCTAAGTGTGGAGGTTTCTAAACTGTCGTT 2692
Query 2696 GCTTGTTGGAAAGAAGTTCGAGATGAGATTGAGATTGACTTAAAGAGGTATATAAA 2751
|||||||| ||||||||||| |||||| |||||||||||| |||| |||||||||
Sbjct 2693 ACTTGTTGGGAAGAAGTTCGAAATGAGACTGAGATTGACTTGAAGAAGTATATAAA 2748
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 137156422162
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5