BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg940653
Length=1204
Score E
Sequences producing significant alignments: (Bits) Value
AT5G11730.1 | Symbols: | Core-2/I-branching beta-1,6-N-acetylg... 1786 0.0
> AT5G11730.1 | Symbols: | Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase
family protein | chr5:3780311-3782713
FORWARD LENGTH=2053
Length=2053
Score = 1786 bits (967), Expect = 0.0
Identities = 1127/1205 (94%), Gaps = 7/1205 (1%)
Strand=Plus/Plus
Query 1 AGCTTTTGTTAGTCTTAAGGATGCAGAATAGGATTGTACAGTTGGAAGAAGGAAAAGAAA 60
|||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 633 AGCTTTTGGTAGTGTTAAGGATGCAGAATAGGATTGTACAGTTGGAAGAAGGAAAAGAAA 692
Query 61 ATGGAATTCCGATTGTTCGATCAGGGCAGTATAAGGGATTTCCGTCGAAACTGCTGCTTC 120
|||||| | | | |||||||||||||| ||||| |||||||| ||||||||||| ||||
Sbjct 693 ATGGAA-T-C-ACAGTTCGATCAGGGCATTATAAAGGATTTCCATCGAAACTGCTACTTC 749
Query 121 TGTTAGGGTTTTTTCTTGCTTTTTCTGTTACTGTCTTCATCATTAGTGTATCTACAATCA 180
|| ||||||| |||||| | ||||||||||||||||||||||||||||||||||| ||||
Sbjct 750 TGCTAGGGTTGTTTCTTACATTTTCTGTTACTGTCTTCATCATTAGTGTATCTACTATCA 809
Query 181 AGTATACTGGTATACAAAGTGTAGTAACCACAGTGACTTCAAGCTTTGTACCATGCCGCG 240
|||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||| |
Sbjct 810 AGTATACTGGAATACAAAGTGTAGTAACCACAGTCACTTCAAGCTTTGTGCCATGCCGTG 869
Query 241 AGGATGAACCGAATAGTTTGAGTAAATGGATACAGCCTCCTGCGGTTCTGATGCATAACA 300
||| ||||||||||||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct 870 AGGGGGAACCGAATAGTTTGAGTAAATGGATACAACCTCCTGCGGTTTTGATGCATAACA 929
Query 301 TGAGCGATGAAGAGCTCCTTTGGCGTGCTTCTTTTTGGCCTCGGAGGAAAGAATATCCCT 360
|||||||||||||||| |||||||||||||||||||||||||| || ||||||||||| |
Sbjct 930 TGAGCGATGAAGAGCTTCTTTGGCGTGCTTCTTTTTGGCCTCGTAGAAAAGAATATCCGT 989
Query 361 TTAAACGAGTTCCGAAGATTGCGTTTATGTTCTTAACTAAAGGCCCCTTGCCGCTTGCTA 420
||||||| ||||| ||| |||||||||||||||| |||||||||||||| |||||||||
Sbjct 990 TTAAACGGGTTCCAAAGGTTGCGTTTATGTTCTTGACTAAAGGCCCCTTACCGCTTGCT- 1048
Query 421 T-GCTTTGGGAGAGGTTCTTAAAGGGTCATAAAGGGCTTTACTCGGTTTACCTTCATCCC 479
| |||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 1049 TCGCTTTGGGAGAGGTTCTTGAAGGGTCACAAAGGGCTTTACTCGGTTTACCTTCATCCA 1108
Query 480 CACCCATCTTTTACAGCCAAATTTCCATCTAGCTCTGTTTTCTACCGGAGGCAGATACCG 539
||||| |||||||||||||| |||||| |||||||||||||| |||||||||| || ||
Sbjct 1109 CACCCTTCTTTTACAGCCAAGTTTCCAGCTAGCTCTGTTTTCCACCGGAGGCAAATTCCA 1168
Query 540 AGCCAGGTTGCAGAATGGGGGAGAATGTCTATGTGTGATGCAGAGAAGCGGCTTCTCGCC 599
||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||
Sbjct 1169 AGCCAGGTTGCAGAATGGGGGAGAATGTCCATGTGCGATGCAGAGAAGCGGCTTCTTGCC 1228
Query 600 AACGCGCTGCTCGATATCTCCAACGAATGGTTTGTTCTCGTCTCAGAGTCATGCATTCCA 659
||||| ||||| ||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1229 AACGCCCTGCTTGATGTGTCCAACGAATGGTTTGTTCTCGTCTCAGAGTCATGCATTCCA 1288
Query 660 CTCTTCAACTTCACAACCATCTACAGCTACTTAAGCCGATCAAAACACAGCTTCATGGGT 719
|||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1289 CTCTACAACTTCACAACCATTTACAGCTACTTAAGCCGATCAAAACACAGCTTCATGGGT 1348
Query 720 GCTTTTGATGACCCTGGACCGTTTGGGCGTGGCCGCTACAACGGGAACATGGAACCTGAA 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1349 GCTTTTGATGACCCTGGACCGTTTGGGCGTGGCCGCTACAACGGGAACATGGAACCTGAA 1408
Query 780 GTTCCCCTTTCCAAATGGCGAAAAGGGTCTCAATGGTTTGAGGTTAACAGGGACCTCGCA 839
||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 1409 GTTCCCCTTACCAAATGGCGAAAAGGGTCTCAATGGTTTGAGGTTAACCGGGACCTGGCA 1468
Query 840 GCTACCATTGTCAAAGACACATTGTATTACCCGAAATTCAAAGAGTTCTGCCGGCCTGCG 899
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1469 GCTACCATTGTCAAAGACACATTGTATTACCCGAAATTCAAAGAGTTCTGCAGGCCTGCT 1528
Query 900 TGCTATGTGGACGAGCATTACTTCCCAACGATGTTGACAATTGAGAAACCAACGGTCTTG 959
||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||
Sbjct 1529 TGCTATGTGGACGAGCATTACTTCCCAACAATGTTGACGATTGAGAAACCAACAGTCTTG 1588
Query 960 GCTAACCGAAGCTTGACATGGGTGGACTGGTCGAGGGGAGGGCCCCACCCAGCTACATTT 1019
|||||||| ||||||||||||||||||||||||||||| || |||||||||||||| |||
Sbjct 1589 GCTAACCGGAGCTTGACATGGGTGGACTGGTCGAGGGGCGGTCCCCACCCAGCTACGTTT 1648
Query 1020 GGGCGATCTGACATTACAGAGAAGTTCTTTG-AAAGGATCTTTGATGGAAGAAACTGCAG 1078
|||||||| ||||||||||| || ||||||| ||| |||||||||||||||||||||||
Sbjct 1649 GGGCGATCGGACATTACAGAAAACTTCTTTGGAAAA-ATCTTTGATGGAAGAAACTGCAG 1707
Query 1079 TTACAATGGTGGCAACACTTCCATGTGTTATCTCTTTGCAAGGAAGTTTGCTCCGAGTAC 1138
|||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct 1708 TTACAATGGTCGCAACACTTCCATGTGTTATCTCTTTGCGAGGAAGTTTGCTCCGAGTGC 1767
Query 1139 TCTGGAGCCTTTGCTTCACATTGCTCCCAAGGTTCTTGGATTTTGAGTAGTTTAGTAATG 1198
| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||
Sbjct 1768 TTTGGAGCCTTTGCTTCACATTGCTCCCAAGATTCTTGGATTTTGAGTAGTTTAGTTATG 1827
Query 1199 TCTCT 1203
|||||
Sbjct 1828 TCTCT 1832
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59136242010
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5