BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg940659
Length=718
Score E
Sequences producing significant alignments: (Bits) Value
AT5G11750.1 | Symbols: | Ribosomal protein L19 family protein ... 1079 0.0
AT4G11630.1 | Symbols: | Ribosomal protein L19 family protein ... 1059 0.0
AT1G24240.1 | Symbols: | Ribosomal protein L19 family protein ... 1050 0.0
> AT5G11750.1 | Symbols: | Ribosomal protein L19 family protein
| chr5:3787230-3789212 FORWARD LENGTH=1089
Length=1089
Score = 1079 bits (584), Expect = 0.0
Identities = 682/727 (94%), Gaps = 16/727 (2%)
Strand=Plus/Plus
Query 1 TCGATTCCTCTTGCGGAGAAATGCAATCGATTCGTGGCAGTACAAGGTTGCTTCAGAGGC 60
|||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 94 TCGATTCCTCTTACGGAGAAATGCAATCGATTCGTAGCAGTACAAGGTTGCTTCAGAGGC 153
Query 61 ATCGTTTCTCCATCTCCAACACTCTTCGTTTCACTTCTTCTTCTACTTCGTGTGGAAGCT 120
|||||||||||||||||||||||||||||||||||||||||||| |||| | ||||||||
Sbjct 154 ATCGTTTCTCCATCTCCAACACTCTTCGTTTCACTTCTTCTTCTTCTTCTTCTGGAAGCT 213
Query 121 GGTCTGAAAATGAATCAAGGA-GGCTAGGGTTTGATTCTTTCCCTTGTACTAGAGCTGCG 179
|||||||||||||||| |||| || |||| |||||||||||||||||||| |||||||||
Sbjct 214 GGTCTGAAAATGAATCGAGGATGG-TAGGATTTGATTCTTTCCCTTGTACCAGAGCTGCG 272
Query 180 ACATATCTCATTAGCTCGTTGAAAAATGTCGGGTTTTCCTCTTCGGCAATACCTAAACAA 239
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 273 ACATATCTCATTAGCTCGTTGAAAAATGTCGGTTTTTCCTCTTCGGCGATACCTAAACAA 332
Query 240 GACTTTACGTATTCGTCAAGGTGTTTTTCCACCACTGGAGATTCTG----------T--T 287
||||||| |||||||| ||||| ||||| || || |||||||||| | |
Sbjct 333 GACTTTAAGTATTCGTTGAGGTGCTTTTCTACTACCGGAGATTCTGTTCAATCTACTCCT 392
Query 288 CAAGGATCCCCTGAGACAGATTGTGTTGTGCCTCAGAGAATCAAGTTTAAGCGGCTTGAT 347
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 393 CAAGGATCCCCTGAGTCAGATTGTGTTGTGCCTCAGAGAATCAAGTTTAAGCGGCTTGAT 452
Query 348 AAAACGGCTAAGCATATAATGCAGATTGTAGACAAGGAGGCAGTTGAGGAAGTGAGAACT 407
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 453 AAAACCGCTAAGCATATAATGCAGATTGTAGACAAGGAGGCAGTTGAGGAAGTGAGAAAT 512
Query 408 CTTAGAGAGATTCCAGAGATAAAGCCTGGTTACATTGTGCAGCTAAAAGTGGAAGTGCCT 467
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 513 CTTAGAGAGATTCCAGAGATAAAGCCTGGTTACATTGTTCAGCTTAAAGTGGAAGTGCCT 572
Query 468 GAGAACAAGAGGCGTGTATCTATTGTAAAAGGCGTTGTCATAGCAAGGCGTAATGCTGGT 527
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 573 GAGAACAAGAGGCGTGTATCAATAGTAAAAGGCGTTGTCATAGCAAGGCGTAATGCTGGT 632
Query 528 CTTAACTCAACATTTAGAATTAGAAGGCTTGTGGCTGGAGTGGGCGTTGAATCCATGTTC 587
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 633 CTTAACTCAACATTTAGAATTAGAAGGCTTGTCGCTGGAGTGGGCGTTGAATCCATGTTC 692
Query 588 CCTTTGTATTCCCCAAACCTGAGGGAGATTAAGGTGTTGGACAAGAAGAAAGTAAGAAGA 647
|| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 693 CCCTTGTATTCCCCAAACCTGAGGGAGATTAAGGTGGTGGACAAGAAGAAAGTAAGAAGA 752
Query 648 GCCAAGCTTTATTACCTCAGGGACAAGGTGAATGCTCTCAAGAAGCATTAACAAACCTTA 707
|||||||| ||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 753 GCCAAGCTCTATTACCTCAGGGACAAGGTGAATGCTCTCAAGAAGCATTAACAA-CCATA 811
Query 708 ATAAAAA 714
||||||
Sbjct 812 -TAAAAA 817
> AT4G11630.1 | Symbols: | Ribosomal protein L19 family protein
| chr4:7019700-7021348 FORWARD LENGTH=1051
Length=1051
Score = 1059 bits (573), Expect = 0.0
Identities = 673/720 (93%), Gaps = 11/720 (2%)
Strand=Plus/Plus
Query 1 TCGATTCCTCTTGCGGAGAAATGCAATCGATTCGTGGCAGTACAAGGTTGCTTCAGAGGC 60
||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct 74 TCGATTCCTCTTGCGGAGAGATGCAATCGATTCGTGGCAGTACACGGTTGCTTCAGAGGC 133
Query 61 ATCGTTTCTCCATCTCCAACACTCTTCGTTTCACTTCTTCTTCTACTTCGTGTGGAAGCT 120
|||||||||||||||||||||||||||||||||||||||||||| ||| ||| | |||||
Sbjct 134 ATCGTTTCTCCATCTCCAACACTCTTCGTTTCACTTCTTCTTCTTCTT-GTG-G-AAGCT 190
Query 121 GGTCTGAAAATGAATCAAGGAGGCTAGGGTTTGATTCTTTCCCTTGTA-CTAGAGCTGCG 179
|||||||||||||||| || | |||||||||||||||| ||||| || | |||||||||
Sbjct 191 GGTCTGAAAATGAATCCAGAAAACTAGGGTTTGATTCTTGCCCTTCTAGC-AGAGCTGCG 249
Query 180 ACATATCTCATTAGCTCGTTGAAAAATGTCGGG-TTTTCCTCTTCGGCAATACCTAAACA 238
|||||||||||||||||||||||||||| | || ||||||||||| || |||||||||||
Sbjct 250 ACATATCTCATTAGCTCGTTGAAAAATG-CAGGCTTTTCCTCTTCAGCTATACCTAAACA 308
Query 239 AGACTTTACGTATTCGTCAAGGTGTTTTTCCACCACTGGAGATTCT---GTTCAAGGATC 295
| ||||||||||| |||| ||||||||||||||||||||||||||| |||||||||||
Sbjct 309 AAACTTTACGTATGCGTCGAGGTGTTTTTCCACCACTGGAGATTCTTCTGTTCAAGGATC 368
Query 296 CCCTGAGACAGATTGTGTTGTGCCTCAGAGAATCAAGTTTAAGCGGCTTGATAAAACGGC 355
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 369 TCCTGAGTCAGATTGTGTTGTGCCTCAGAGAATCAAGTTTAAGCGGCTTGATAAAACCGC 428
Query 356 TAAGCATATAATGCAGATTGTAGACAAGGAGGCAGTTGAGGAAGTGAGAACTCTTAGAGA 415
|||||||||||||||||||||||||||||| || ||||||||||||||| ||||||||||
Sbjct 429 TAAGCATATAATGCAGATTGTAGACAAGGAAGCGGTTGAGGAAGTGAGATCTCTTAGAGA 488
Query 416 GATTCCAGAGATAAAGCCTGGTTACATTGTGCAGCTAAAAGTGGAAGTGCCTGAGAACAA 475
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 489 GATTCCTGAGATAAAGCCCGGTTACATTGTGCAGCTAAAAGTGGAAGTGCCTGAGAACAA 548
Query 476 GAGGCGTGTATCTATTGTAAAAGGCGTTGTCATAGCAAGGCGTAATGCTGGTCTTAACTC 535
||| |||||||| || || |||||||| |||||||||||||||||||||||||| |||||
Sbjct 549 GAGACGTGTATCAATCGTGAAAGGCGTCGTCATAGCAAGGCGTAATGCTGGTCTGAACTC 608
Query 536 AACATTTAGAATTAGAAGGCTTGTGGCTGGAGTGGGCGTTGAATCCATGTTCCCTTTGTA 595
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 609 AACATTTAGAATTAGAAGGCTTGTTGCTGGAGTGGGCGTTGAATCCATGTTCCCCTTGTA 668
Query 596 TTCCCCAAACCTGAGGGAGATTAAGGTGTTGGACAAGAAGAAAGTAAGAAGAGCCAAGCT 655
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 669 TTCCCCAAACCTGAGGGAGATTAAGGTGGTGGACAAGAAGAAAGTAAGAAGAGCCAAGCT 728
Query 656 TTATTACCTCAGGGACAAGGTGAATGCTCTCAAGAAGCATTAACAAACCTTAATAAAAAA 715
||||||||||||||||||||||||||||| ||||||||||||||| ||| | |||||||
Sbjct 729 ATATTACCTCAGGGACAAGGTGAATGCTCTTAAGAAGCATTAACAA-CCTCAGTAAAAAA 787
> AT1G24240.1 | Symbols: | Ribosomal protein L19 family protein
| chr1:8586353-8588116 FORWARD LENGTH=893
Length=893
Score = 1050 bits (568), Expect = 0.0
Identities = 668/714 (94%), Gaps = 16/714 (2%)
Strand=Plus/Plus
Query 1 TCGATTCCTCTTGCGGAGAAATGCAATCGATTCGTGGCAGTACAAGGTTGCTTCAGAGGC 60
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 59 TCGATTCCTTTTGCGGAGAAATGCAATTGATTCGTGGCAGTACAAGGTTGCTTCAGAGGC 118
Query 61 ATCGTTTCTCCATCTCCAACACTCTTCGTTTCACTTCTTCTTCTACTTCGTGTGGAAGCT 120
||||||||||||||||||||||||||| |||||||||||| | | | | ||||||||||
Sbjct 119 ATCGTTTCTCCATCTCCAACACTCTTCCTTTCACTTCTTC-T-T-C-T--TGTGGAAGCT 172
Query 121 GGTCTGAAAATGAATCAAGGAGGCTAGGGTTTGATTCTTTCCCTTGTACTAGAGCTGCGA 180
|||||| |||||||| |||| |||||| ||||||||||||||| |||||||||||||||
Sbjct 173 GGTCTGCTAATGAATCGAGGAAGCTAGGCTTTGATTCTTTCCCTAGTACTAGAGCTGCGA 232
Query 181 CATATCTCATTAGCTCGTTGAAAAATGTCGGGTTTTCCTCTTCGGCA--A-TACCTAAAC 237
||||||||||||||||||||||||||| ||| |||||||||| |||| | |||||||||
Sbjct 233 CATATCTCATTAGCTCGTTGAAAAATGCCGGCTTTTCCTCTTTGGCAGTAGTACCTAAAC 292
Query 238 AAGACTTTACGTATTCGTCAAGGTGTTTTTCCACCACTGGAGATTCTGTTCAAGGATCCC 297
|| | || | |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 293 AA-A----AC-TTTTCGTCGAGGTGTTTTTCCACCACTGGAGATTCTGTTCAAGGATCCC 346
Query 298 CTGAGACAGATTGTGTTGTGCCTCAGAGAATCAAGTTTAAGCGGCTTGATAAAACGGCTA 357
||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 347 CTGAGTCAGATTGTGTTGTGCCTCAGAGAATCAAGTTTAAGCGGCTTGATAAAACCGCTA 406
Query 358 AGCATATAATGCAGATTGTAGACAAGGAGGCAGTTGAGGAAGTGAGAACTCTTAGAGAGA 417
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 407 AGCATATTATGCAGATTGTAGACAAGGAAGCAGTTGAGGAAGTGAGAACTCTTAGAGAGA 466
Query 418 TTCCAGAGATAAAGCCTGGTTACATTGTGCAGCTAAAAGTGGAAGTGCCTGAGAACAAGA 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 467 TTCCAGAGATAAAGCCTGGTTACATTGTGCAGCTAAAAGTGGAAGTGCCTGAGAACAAGA 526
Query 478 GGCGTGTATCTATTGTAAAAGGCGTTGTCATAGCAAGGCGTAATGCTGGTCTTAACTCAA 537
|||||||||| || ||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 527 GGCGTGTATCAATCGTAAAAGGCGTCGTCATAGCAAGGCGTAATGCTGGTCTCAACTCAA 586
Query 538 CATTTAGAATTAGAAGGCTTGTGGCTGGAGTGGGCGTTGAATCCATGTTCCCTTTGTATT 597
|||||||||||||||||||||| |||||||||||||| |||||||||||||| |||||||
Sbjct 587 CATTTAGAATTAGAAGGCTTGTTGCTGGAGTGGGCGTCGAATCCATGTTCCCCTTGTATT 646
Query 598 CCCCAAACCTGAGGGAGATTAAGGTGTTGGACAAGAAGAAAGTAAGAAGAGCCAAGCTTT 657
||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct 647 CCCCAAACCTGAGGGTGATTAAGGTGGTGGACAAGAAGAAAGTAAGAAGAGCCAAGCTTT 706
Query 658 ATTACCTCAGGGACAAGGTGAATGCTCTCAAGAAGCATTAACAAACCTTAATAA 711
||||||||||||| ||||| ||||||||||||||||||||||| |||||||||
Sbjct 707 ATTACCTCAGGGAAAAGGTCAATGCTCTCAAGAAGCATTAACAG-CCTTAATAA 759
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34812263871
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5