BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg940660
Length=484
Score E
Sequences producing significant alignments: (Bits) Value
AT5G11760.1 | Symbols: | unknown protein; CONTAINS InterPro DO... 268 3e-71
> AT5G11760.1 | Symbols: | unknown protein; CONTAINS InterPro
DOMAIN/s: Protein of unknown function DUF1764, eukaryotic (InterPro:IPR013885);
Has 1807 Blast hits to 1807 proteins in
277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi
- 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source:
NCBI BLink). | chr5:3789259-3790452 FORWARD LENGTH=840
Length=840
Score = 268 bits (145), Expect = 3e-71
Identities = 264/317 (83%), Gaps = 25/317 (8%)
Strand=Plus/Plus
Query 1 TGATTTTTTAA-ATTGCATCAAAATGTCTAATAAGAAGAAGAAGAAGACTCGTAGCGGTT 59
||||||||||| |||||||||||||||| |||||||| |||| |||||||||| |
Sbjct 119 TGATTTTTTAATATTGCATCAAAATGTC------GAAGAAGAGGAAGGCTCGTAGCGGCT 172
Query 60 ACTTGAAGAAGTCATCACAAGGAGGAGACAAACCTGAGATACAGCCAAGGAAACTAGTTC 119
||||||||||||||||||||||||||||| || ||| | |||||| ||| ||||||||||
Sbjct 173 ACTTGAAGAAGTCATCACAAGGAGGAGACGAAGCTGTGGTACAGCGAAGAAAACTAGTTC 232
Query 120 CAAAACCTGGTAAATTTGGGAAAGAGATTGATGATATCTTTACTGGG-GTATATCAGAGG 178
|||||||||||||| |||||||||||||||||||||||||| ||||| | || |||||||
Sbjct 233 CAAAACCTGGTAAAATTGGGAAAGAGATTGATGATATCTTTGCTGGGAG-ATCTCAGAGG 291
Query 179 ACGCCAGAGGTCCAAGTTCCCGAGTCGAGAGAG--GTTAGA-GC--A-G-A---GATTGC 228
||||||||||||||| ||||||||||||||| | ||| || | | | || | |
Sbjct 292 ACGCCAGAGGTCCAAAATCCCGAGTCGAGAGACACGCCAGAAGCCCAAGTATCCGAGT-C 350
Query 229 AA-AGA-AGAAGAG--GAAGAGGAATGAGCTTAATTTTGTGGTCAATAACAACACGGAAA 284
| ||| | |||| || || ||||||||| ||| ||| ||||||||||||||| ||||
Sbjct 351 GAGAGACACTAGAGCTGA-GATGAATGAGCTCAATGTTGGGGTCAATAACAACACTGAAA 409
Query 285 GCCGACCCAGGATGAGA 301
||||||| |||| ||||
Sbjct 410 GCCGACCTAGGACGAGA 426
Score = 172 bits (93), Expect = 2e-42
Identities = 123/137 (90%), Gaps = 3/137 (2%)
Strand=Plus/Plus
Query 346 ACCCAGGAAGAGAACTCCAGAAGGGTTTCGAGTGTACAAGGAAGAA-GAAATTGGTTTCA 404
||||||||||| |||| ||| ||||| ||||||| || |||| || |||||||||||||
Sbjct 570 ACCCAGGAAGACAACTGAAGACGGGTTACGAGTGTTCACGGAA-AATGAAATTGGTTTCA 628
Query 405 ACAGGACTGATGCTGGTGGTACTCGTCTTTGTCCCTTTGACTGTAATTGTTGCTTCTAAA 464
|||||| |||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 629 ACAGGAAAGATGCTGGTGGTACTCGTTTTTGTCCCTTTGACTGTTATTGTTGCTTCTAAA 688
Query 465 TCTTCTTAAACCAGTTT 481
||||||||||||| |||
Sbjct 689 TCTTCTTAAACCA-TTT 704
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23057473473
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5