BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg940676
Length=934
Score E
Sequences producing significant alignments: (Bits) Value
AT5G11910.1 | Symbols: | alpha/beta-Hydrolases superfamily pro... 1432 0.0
> AT5G11910.1 | Symbols: | alpha/beta-Hydrolases superfamily protein
| chr5:3836331-3838213 REVERSE LENGTH=1154
Length=1154
Score = 1432 bits (775), Expect = 0.0
Identities = 881/933 (94%), Gaps = 4/933 (0%)
Strand=Plus/Plus
Query 1 GGTATCTCCTCCGCGCGACGATGTCGGAGACTCGCCGGAATCAATCTAGCCATGAACGAA 60
||||||||||||||||||||||||| ||||||||||||||||| |||||| |||||| ||
Sbjct 12 GGTATCTCCTCCGCGCGACGATGTCAGAGACTCGCCGGAATCAGTCTAGCGATGAACAAA 71
Query 61 TCGACAACTCGGAGATTCAACACCAAAGACTTGTAATTGAGAACAGTCATGGTGAGAAAC 120
|||| || || |||||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct 72 TCGAAAAATCAGAGATTCAGCACCAAAGAGTTGTAATTGAGAACAGTCATGGTGAGAAAC 131
Query 121 TCGTAGGAGTTTTGCATGATACGGGTTCTATAGAGACTGTTGTCATCTGCCATGGATTTC 180
|||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct 132 TCGTAGGAGTTTTGCATGATACTGGTTCTACAGAGACTGTTGTCATCTGCCATGGATTTC 191
Query 181 GGTCATCAAAGAATCGGATTCCAATGCTGACCATTGCCAGTTTCTTTGAAAGAGCAATGA 240
| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 192 GTTCATCAAAGAATCGGATTCCAATGCTGACCATTGCAAGTTTCTTTGAAAGAGCAATGA 251
Query 241 TCAGCTCTTTCCGGTTTGACTTCGCTGGCAACGGGGAAAGTGAAGGATCATTTCAGTATG 300
|||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 252 TCAGTTCTTTCCGGTTTGACTTTGCTGGCAACGGGGAAAGCCAAGGATCATTTCAGTATG 311
Query 301 GTAACTATCGCCGTGAAGTTGAAGATCTGCGCTCTGTTCTGCAACACTTGCGTGGGGTTA 360
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||| ||||
Sbjct 312 GTAACTATCGCCGTGAAGTTGAAGATTTGCGCTCTGTTTTGCAACACTTGCGTGGTGTTA 371
Query 361 ACCGTGAT-ATTTCTGCCATAATTGGACATAGTAAAGGTGGAAATGTGGTGCTTTTGTAT 419
|||||| | |||||||| || || ||||||||||||||||||||||||||||||||||||
Sbjct 372 ACCGTG-TGATTTCTGCGATTATCGGACATAGTAAAGGTGGAAATGTGGTGCTTTTGTAT 430
Query 420 GCAGCAAAGTACAAGGATGTGCACACTGTTGTGAATATCTCCGGCCGGTTTTTTCTTGAG 479
|||||||||||||| |||||||| ||||||||||||||||| || ||||||||||||||
Sbjct 431 GCAGCAAAGTACAATGATGTGCAGACTGTTGTGAATATCTCAGGGCGGTTTTTTCTTGAC 490
Query 480 AGAGGAATCGAAGGCCGGCTTGGTAAGGACTATTTCAAGAGAATCAAAGATAATGGATTC 539
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 491 AGAGGAATCGAATTTCGGCTTGGTAAGGACTACTTCAAGAGAATCAAAGATAATGGATTC 550
Query 540 ATAGATGTTAGTAACAGAAAGGGAAAGTTTGAATATCGGGTAACAGAAGAGAGTCTAATG 599
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 551 ATTGATGTTAGCAACAGAAAGGGAAAGTTTGAATATCGGGTAACAGAAGAGAGTCTAATG 610
Query 600 GACCGTCTCACAACCAATGCTCATGAAGCATGTCTCTCAATTCATGAAAACTGCAGGGTC 659
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 611 GACCGTCTCACAACCAATGCTCATGAAGCATGTCTCTCAATTCGTGAAAACTGCAGGGTC 670
Query 660 TTAACAGTTCATGGGTCAAATGATAGGATTGTGCATGTAACAGAAGCGTCCGAATTTGCC 719
|| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 671 TTGACAGTCCATGGGTCAAATGATAGGATTGTGCATGTAACAGAAGCGTCCGAATTTGCT 730
Query 720 AAACATATAAAGAATCATAAGCTGTGTCTTATTGAAGGAGCTGATCATGAGTTCACTTCT 779
||||| ||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 731 AAACAGATAAAGAATCATAAGCTGTATGTTATTGAAGGAGCTGATCATGAGTTCACTTCT 790
Query 780 CACCAGCATCAGCTTGCTTCAATTGTTCTCTCATTCTTCAAATTGGATCCCAAGAAAGAT 839
||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||
Sbjct 791 CACCAGCATCAGCTTGCTTCAATCGTTCTCTCATTCTTTAAATTGGATCCTAAGAAAGAT 850
Query 840 GATGAGTCAGGTGATATCAGTACAAGTAACCAAGACTCTATGAGATCAGCTGTTCCTTTT 899
|||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| ||
Sbjct 851 GATGAGTCAGGTGATATCAGTACAAGTAACCAAGACTCCATGAGATCAGTTGTTCCTATT 910
Query 900 ACATCGCGAATTTAAA-CAGCTTAGCTGAGTTA 931
|||||||||||||||| | |||| |||||||||
Sbjct 911 ACATCGCGAATTTAAATC-GCTTTGCTGAGTTA 942
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45662839623
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5