BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg940677
Length=1687
Score E
Sequences producing significant alignments: (Bits) Value
AT5G11920.1 | Symbols: AtcwINV6, cwINV6 | 6-&1-fructan exohydro... 2601 0.0
> AT5G11920.1 | Symbols: AtcwINV6, cwINV6 | 6-&1-fructan exohydrolase
| chr5:3839391-3842371 FORWARD LENGTH=1917
Length=1917
Score = 2601 bits (1408), Expect = 0.0
Identities = 1603/1696 (95%), Gaps = 17/1696 (1%)
Strand=Plus/Plus
Query 3 GAGTAAGACCGATCATCGATGGCTGAGGCAATGGCACAGAATCTTCTTCAAGACAAC-CA 61
|||||||||||||||||||||||||| | ||||| |||||||||||||||| || |
Sbjct 82 GAGTAAGACCGATCATCGATGGCTGATGTAATGGAACAGAATCTTCTTCAA-ACCGCTGT 140
Query 62 GCTTAACCGGACTTCCTTCCATTTCCAACCTCAGAGAAATTGGCTCAACGATCCAAACGC 121
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 141 GCTTAACCGGACGTCCTTCCATTTCCAACCTCAGAGAAATTGGCTCAACGATCCAAACGC 200
Query 122 GCCAATGTACTACAAAGGATTCTACCATTTGTTCTACCAGCACAACCCTTTGGCTCCTGA 181
||||||||| |||||||||||||||||||||||||||||| | |||||||||||||| ||
Sbjct 201 GCCAATGTATTACAAAGGATTCTACCATTTGTTCTACCAGAATAACCCTTTGGCTCCCGA 260
Query 182 TTTCAGTA--A-AATAATGATATGGGGGCACTCTGTTTCACAAGATATGGTCAACTGGAT 238
||||||| | || ||| |||||||| ||||||||||||||||| |||||||| |||||
Sbjct 261 ATTCAGTAGGACAAGAATCATATGGGGACACTCTGTTTCACAAGACATGGTCAATTGGAT 320
Query 239 CCAACTTGAACCAGCCCTT-TCTCCTTCTGAGCCCTTTGACATCAACAGCTGCTGGTCAG 297
||| || |||||||||||| || ||||||||| |||||||||||||||||||||||||||
Sbjct 321 CCAGCTCGAACCAGCCCTTGTC-CCTTCTGAGTCCTTTGACATCAACAGCTGCTGGTCAG 379
Query 298 GATCCGCCACGATCCTCCCCGATGGCAGACCTGTAATTTTGTACACCGGACTCGACGAT- 356
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| |
Sbjct 380 GATCCGCCACGATCCTCCCTGATGGCAGACCTGTAATTTTGTACACTGGACTCGACG-TC 438
Query 357 AACAACAAACAGCAAGTCACAGTTGTTGCCGAACCAAAGGACGTTTCTGACCCTTTGCTT 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 439 AACAACAAACAGCAAGTCACAGTTGTTGCCGAACCAAAGGACGTTTCTGACCCTTTGCTT 498
Query 417 CGTGAGTGGGTTAAGCCAAAGTACAATCCTGTGATGGTTCCGCCAAGTAATGTCCCTTTT 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 499 CGTGAGTGGGTTAAGCCAAAGTACAATCCTGTGATGGTTCCGCCAAGTAATGTCCCTTTT 558
Query 477 AATTGTTTCCGTGA-CCCAACG-ACGGCGTGGCAAGGGCAAGATGGGAAATGGAGAGTGC 534
|||||||||||||| |||| || | ||||||| |||||||||||||||||||||||||||
Sbjct 559 AATTGTTTCCGTGATCCCA-CGGA-GGCGTGGAAAGGGCAAGATGGGAAATGGAGAGTGC 616
Query 535 TCATAGGAGCTAAGGAGAAAGATACTGAGAAAGGAATGGCTATTTTGTACCGAAGCGATG 594
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 617 TCATAGGAGCTAAGGAGAAAGATACTGAGAAAGGAATGGCGATTTTGTACCGAAGCGATG 676
Query 595 ATTTTGTCCAGTGGACAAAGTATACAGTGCCTTTACTTGAGTCAGAAGGAACCGGAATGT 654
||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 677 ATTTTGTCCAGTGGACAAAGTATCCGGTGCCTTTACTTGAGTCAGAAGGAACCGGAATGT 736
Query 655 GGGAATGCCCTGATTTTTTCCCGGTTTCTGTCACTGGTAAAGAAGGTGTTGAGACTTCAG 714
||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |
Sbjct 737 GGGAATGCCCTGATTTTTTCCCGGTTTCTATCACTGGTAAAGAAGGTGTTGACACTTCGG 796
Query 715 TGAACAATGCTACTGTGAGGCATGTCGTGAAGGCGAGTTTTGGAGGCAATGATTGCTATG 774
| |||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 797 TAAACAATGCTAGTGTGAGGCATGTCTTGAAGGCGAGTTTTGGAGGCAATGATTGCTATG 856
Query 775 TCATTGGAAAATACTCTTCTGAGAATGAAGAATTTTCAGCGGATTATGAGTTCACTAACA 834
||||||| |||||||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct 857 TCATTGGTAAATACTCTTCTGAGACTGAAGACTTTTCAGCGGATTATGAGTTCACTAACA 916
Query 835 CTAGTGCGGATTTGAGATATGATTATGGAAAGTTTTATGCCTCGAAGGCGTTCTTCGATA 894
||||||| ||||||||||||||| |||||| |||||||||||| ||||||||||||||||
Sbjct 917 CTAGTGCAGATTTGAGATATGATCATGGAACGTTTTATGCCTCAAAGGCGTTCTTCGATA 976
Query 895 GTGTTAAAAATCGGAGGATCAACTGGGGATGGGTCATAGAGACTGATAGCAAAGAAGATG 954
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 977 GTGTTAAAAATAGGAGGATCAACTGGGGATGGGTCATAGAGACTGATAGCAAAGAAGATG 1036
Query 955 ATTTTAAGAAAGGATGGGCTGGCCTTATGTCTCTTCCCAGGGAAATGTGGCTGGACACAA 1014
||||||||||||||||||||||||||||| |||||||||||||||| ||| |||||||||
Sbjct 1037 ATTTTAAGAAAGGATGGGCTGGCCTTATGACTCTTCCCAGGGAAATTTGGATGGACACAA 1096
Query 1015 ATGGAAAGAAGCTGATACAATGGCCAATTGAAGAAATCAACAATCTCCGGACCAAAAGTG 1074
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1097 GTGGAAAGAAGCTGATGCAATGGCCAATTGAAGAAATCAACAATCTCCGGACCAAAAGTG 1156
Query 1075 TTAGCCTTGAT--T-GCTATGAATTCGAAACCGGCTCGACCTTCGAAATTTCAGGCATCA 1131
||||||||||| | ||||||||||| |||||||||| ||||| ||||| ||||||||||
Sbjct 1157 TTAGCCTTGATGATTGCTATGAATTCAAAACCGGCTCTACCTTTGAAATCTCAGGCATCA 1216
Query 1132 CTGCTGCCCAAGCCGACGTAGAGGTGACTTTTAATCTGCCTTTCCTGGACGATTATCCCG 1191
||||||||||||| || ||||| |||||||||||||||||||||||||| || ||||||
Sbjct 1217 CTGCTGCCCAAGCAGATGTAGAAGTGACTTTTAATCTGCCTTTCCTGGAAAATAATCCCG 1276
Query 1192 AGATACTTGATGCTGACCAAGTTGATGATGCGACTCTGTTTGATCATGACAACTCGGATG 1251
||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||| ||
Sbjct 1277 AGATACTTGATGCTGACCAAGTTGATGATGCGACTCTGTTTGATCGTGATAGCTCGGTTG 1336
Query 1252 GATGTGTTTACGGGCCTTTTGGACTGCTAGCATTGGCTACCAATGATTTATCAGAACAAA 1311
||||||||||||||||||||||| |||||||||||||| ||| |||||||||||||||||
Sbjct 1337 GATGTGTTTACGGGCCTTTTGGATTGCTAGCATTGGCTTCCAGTGATTTATCAGAACAAA 1396
Query 1312 CCGCAATCTTCTTTAAAGTTATTCGTCGCGGAAACGGATATGCAGTTGTAATGGGCAGCA 1371
||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct 1397 CCGCAATCTTCTTTAAAGTTATTCGTCGCGGTAACGGATATGCAGTTGTAATGTGCAGCA 1456
Query 1372 GCGAGAAGAGGTCTTCGTTGAGAGACAACATaaaaaaaTCTTCGCATGGAACATTCCTAG 1431
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1457 GCGAGAAGAGGTCTTCGTTGAGAGACAACATAAAAAAATCTTCGCATGGAGCATTCCTAG 1516
Query 1432 ATATTGATCCAAGGCATGAGAAGATCTCATTAAGATGTTTGATCGATCACTCGATTATAG 1491
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1517 ATATTGATCCAAGGCATGAGAAGATCTCATTAAGATGTTTGATCGATCACTCGATTATAG 1576
Query 1492 AGAGCTACGGAGCAGGAGGAAAAAGTGTGATAACATCTAGGGTTTATCCAAAATTGGCAA 1551
|||||||||||| ||||||||||| ||||||||||||||| |||||||||||||||||||
Sbjct 1577 AGAGCTACGGAGTAGGAGGAAAAACTGTGATAACATCTAGAGTTTATCCAAAATTGGCAA 1636
Query 1552 TTGGCGAAGCAGCTAAGCTGTATGTGTTCAATGATGGAGAAAAGGGTGTGATCATGACGT 1611
|||| ||||| |||||||| ||||| ||||||||||||||||| ||||||||||||||||
Sbjct 1637 TTGGTGAAGCCGCTAAGCTTTATGTCTTCAATGATGGAGAAAATGGTGTGATCATGACGT 1696
Query 1612 CCCTGGAAGCTTGGAGCATGAGAAATGCCCAAATCAATTCAAACCCAACTTATTAATGAA 1671
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 1697 CCCTGGAAGCTTGGAGCATGAGAAATGCCCAAATCAATTCAAACCCAACTTATTAGTTAA 1756
Query 1672 TCATATAATATTGATA 1687
||||||||||| ||||
Sbjct 1757 TCATATAATAT-GATA 1771
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83383105245
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5