BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg940683
Length=1078
Score E
Sequences producing significant alignments: (Bits) Value
AT5G11960.1 | Symbols: | Protein of unknown function (DUF803) ... 1792 0.0
> AT5G11960.1 | Symbols: | Protein of unknown function (DUF803)
| chr5:3858579-3861515 REVERSE LENGTH=1361
Length=1361
Score = 1792 bits (970), Expect = 0.0
Identities = 1040/1074 (97%), Gaps = 4/1074 (0%)
Strand=Plus/Plus
Query 1 GTTTCTCGTCGGCGTTTTGAGAG--ATGTGGGAATCGATTTGCCTAACGCTTGCGGCCAC 58
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 29 GTTTCTCGTCGGCGTTTTGAGAGACATGTGGGAATCGATTTGCCTAACGCTTGCGGCCAC 88
Query 59 CGCCGGCAACAATATCGGCAAAGTTCTCCAGAAGAAGGGCACTATTATCCTCCCTCCTCT 118
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 89 CGCCGGAAACAATATCGGCAAGGTTCTCCAGAAGAAGGGCACTATTATCCTCCCTCCTCT 148
Query 119 CTCCCTCAAGCTTAAGGTGATAAGAGCATATGCTGTTAACAAACCATGGGCGTTAGGTTT 178
|||||| |||||||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct 149 CTCCCTTAAGCTTAAGGTGTTAAGAGCATATGCTGAAAACAAACCATGGGCGTTAGGTTT 208
Query 179 TCTTATGGACATTGTTGGGGCTTTGTTGATGCTGAGAGCACTATCACTTGCCCCTGTGTC 238
|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 209 TCTTATGGACATTGTTGGTGCTTTGTTGATGCTGAGAGCACTATCACTTGCTCCTGTGTC 268
Query 239 TGTTGTTCAGCCAGTCTCGGGGTGTGGACTTGCCATTCTTTCCGTCTTTTCGCATTTTTA 298
|||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 269 AGTTGTTCAGCCAGTCTCGGGATGTGGCCTTGCCATTCTTTCCGTCTTTTCGCATTTTTA 328
Query 299 TTTGAAGGAAGTCATGAATGTTTTTGACTGGATTGGGATTACTGTTGCCGGCATTGGGAC 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 329 TTTGAAGGAAGTCATGAATGTTTTTGACTGGATTGGGATTACTGTTGCCGGCATTGGGAC 388
Query 359 CATAGGAGTTGGTGCTGGTGGTGAGGAGCAAGAAGCATCATTAATATCGGTCTTCCAGTT 418
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 389 CATAGGAGTTGGGGCTGGTGGTGAGGAGCAAGAAGCATCATTAATATCTGTCTTCCAGTT 448
Query 419 GCTGTGGCTAGCATTGGTTGTTGCCATCTTGTTTGTACTACTAAATGCGTGGCTTCATAT 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 449 GCTGTGGCTAGCATTGGTTGTTGCCATCTTGTTTGTACTACTAAATGCGTGGCTTCATAT 508
Query 479 CTTCAAACGCCAGCGCAGGGAGCAGGAGCTGGGGGAGTATGAAGTGGTGGAAGAAATTAT 538
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 509 CTTCAAACGCCAGCGCAGGGAGCAGGAGCTGGGGGAATATGAAGTGGTGGAAGAAATCAT 568
Query 539 ATATGGCTTGGAATCTGGGATTTTATTCGGGATGGCATCTGTAGTATCGAAGATGGGTTT 598
|||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||
Sbjct 569 ATATGGCTTGGAATCTGGCATTTTATTCGGAATGGCATCTGTAGTATCAAAGATGGGTTT 628
Query 599 TGTATTCGTGGAGCAGGGATTCTCTGCAATGTTCATTCCCATGTGCATTTCGATTAGTAT 658
||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 629 TGTATTCGTGGAGCAGGGATTTTCTACAATGTTCATTCCCATGTGCATTTCGATTAGTAT 688
Query 659 ATGCTGTAGTGGAACAGGATTTTTCTACCAGACTCGGGGACTAAAACATGGGAGAGCAAT 718
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 689 ATGCTGTAGTGGAACTGGATTTTTCTACCAGACTCGGGGACTAAAACATGGGAGAGCAAT 748
Query 719 CGTAGTATCCACTTGCGCTGCTGTAGCATCAATTGTAACAGGTGTGGTTGCAGGAATGTT 778
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 749 CGTAGTATCCACTTGCGCTGCTGTGGCATCAATTGTAACAGGTGTGGTTGCAGGAATGTT 808
Query 779 TGCTCTGGGTGAGAAATTACCCAATTCACCATCTGGACGCCTTTTACTTCTCCTGGGATG 838
||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct 809 TGCTCTGGGTGAGAAATTACCCACTTCACCATCTGGACGGCTTTTACTTCTCCTGGGATG 868
Query 839 GTTACTTATCATGCTAGGTGTTGTATTACTTGTGACTTCATCACGGCTTATCAGACATCT 898
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 869 GTTACTTATCATGCTAGGTGTTGTATTACTAGTGACTTCATCACGGCTTATCAGACATCT 928
Query 899 TCCACGGTCATTCCGGCGTTCCAGACAAACCAGTTTAGAAAGAGGTTTCAACATAAGGCG 958
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 929 TCCACGGTCATTCCGGCGTTCAAGGCAAACCAGTTTAGAAAGAGGTTTCAACATAAGGCG 988
Query 959 GACACCTTCTCACACACCAAAGGATACAAACCCAAGTGCGGTTATCCAAGCAGCAACATT 1018
|||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 989 GACAACTTCTCACACACCAAAGGATACAAACCCAAGTGCGGTTATCCAGGCAGCAACATT 1048
Query 1019 ACACCATCTCTTATCATCCCCATCAAAAGATAAAGACTAAA-GAGATTCAGAAA 1071
|||||||||||||||||||||||||||||| |||||||||| | ||||||||||
Sbjct 1049 ACACCATCTCTTATCATCCCCATCAAAAGACAAAGACTAAATG-GATTCAGAAA 1101
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52810973340
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5