BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg940693
Length=505
Score E
Sequences producing significant alignments: (Bits) Value
AT5G12070.1 | Symbols: | Plant self-incompatibility protein S1... 656 0.0
AT5G12060.1 | Symbols: | Plant self-incompatibility protein S1... 573 5e-163
> AT5G12070.1 | Symbols: | Plant self-incompatibility protein
S1 family | chr5:3896950-3897408 REVERSE LENGTH=459
Length=459
Score = 656 bits (355), Expect = 0.0
Identities = 419/450 (93%), Gaps = 3/450 (1%)
Strand=Plus/Plus
Query 36 CTAAAAACACAAGTTCATGTGGTGGTAATATCTCTACTCATCCAAATAGCTTTCTCATCA 95
||||||||||||||||||||||||||||||| |||||||||||||||||| || || |||
Sbjct 13 CTAAAAACACAAGTTCATGTGGTGGTAATATATCTACTCATCCAAATAGC-TT-TC-TCA 69
Query 96 CAAGCGAAAAACGATTTTGATCTTAATTGGTCTACTATAAAATCAATGGTGAGGATCACA 155
|||| |||| || || |||||| || ||||||||| |||||||| |||||| |||||||
Sbjct 70 CAAGTGAAACCCGGTTCTGATCTAAAGTGGTCTACTTTAAAATCAGTGGTGACGATCACA 129
Query 156 AACCGCCTTGGTGATGGTTCGACCTTAAACCTTCATTGTAAGTCCTCAGATGACGATCTG 215
||||||||||| ||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct 130 AACCGCCTTGGCGATGGTTCGACCTTAAAACTTCATTGTAAGTCCGCAGATGACGATCTT 189
Query 216 GGCCTCCAAATCCTCGCTCCGAATGGTTCTTGGTCGTTTAAGTTTAGACCAAATATTATT 275
|||||| |||||||||||||||||||||||||||||||||| |||||||||| |||| ||
Sbjct 190 GGCCTCAAAATCCTCGCTCCGAATGGTTCTTGGTCGTTTAAATTTAGACCAAGTATTGTT 249
Query 276 TTTGGAGTGACACTTTTCTCTTGTCATTTCACATGGCCTGGACAATCAAAATGGTTTAAC 335
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 250 CCTGGAGTGACACTTTTCTTTTGTCATTTCACATGGCCTGGACAATCAAAATGGTTTAAC 309
Query 336 ATTTACGATGATGACAGAGATGGTGTTCGTAAGGGTATTCCATGCATCTACTGTATCTGG 395
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 310 ATTTACGATGATGACAGAGATGGTGTTCGTATGGGTATTCCATGCATCTACTGTATCTGG 369
Query 396 GATATAAGCAAAAATGGGCCATGCAGGTTTAGTGAAAGAGATGATGCATTTAATATTTGT 455
|||||| ||||| |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 370 GATATAGGCAAATATGGGCCATGCAGGTTTAGTGAAATAGATGATGCATTTAATATTTGT 429
Query 456 TATGACTGGAATGGAAATCGAAGATCATAA 485
||||| ||||||||||| ||||||||||||
Sbjct 430 TATGATTGGAATGGAAACCGAAGATCATAA 459
> AT5G12060.1 | Symbols: | Plant self-incompatibility protein
S1 family | chr5:3894919-3895371 REVERSE LENGTH=453
Length=453
Score = 573 bits (310), Expect = 5e-163
Identities = 410/456 (90%), Gaps = 15/456 (3%)
Strand=Plus/Plus
Query 33 ATCCTAAAAACACAAGTTCATGTGGTGGTAATATCTCTACTCATCCAAATAGCTTTCTCA 92
|||||||||||||||||||||||||||||||||| |||||||||| ||||||| || ||
Sbjct 10 ATCCTAAAAACACAAGTTCATGTGGTGGTAATATATCTACTCATCAAAATAGC-TT-TC- 66
Query 93 TCACAAGCGAAAAACGATTTTGATCTTAATTGGTCTACTATAAAATCAATGGTGAGGATC 152
||||||| ||||| |||||||||| |||||||||||||| | ||| |||||||||||||
Sbjct 67 TCACAAGTGAAAACCGATTTTGATGTTAATTGGTCTACT-TCAAA--AATGGTGAGGATC 123
Query 153 ACAAACCGCCTTGGTGATGGTTCGACCTTAAACCTTCATTGTAAGTCCTCAGATGACGAT 212
|||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||
Sbjct 124 ACAAACCGCCTTGGTGATGGTTTGACCTTAAACCTTCATTGTAAGTCCGCAGATGACGAT 183
Query 213 CTGGGCCTCCAAATCCTCGCTCCGAATGGTTCTTGGTCGTTTAAGTTTAGACCAAATATT 272
|| |||||| ||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 184 CTTGGCCTCAAAATCCTCGCTCCGAATGGTTCTTGGTCGTTTAAGTTTAGAACAAGTATT 243
Query 273 ATTTTTGGAGTGACACTTTTCTCTTGTCATTTCACATGGCCTGGACAATCAAAATGGTTT 332
|| ||| ||||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct 244 GTT---GGAACGACACTTTTCTATTGTCATTTCACATGGCCTGGACAATCAAAAAGGTTT 300
Query 333 AACATTTACGATGATGACAGAGATGGTGTTCGTAAGGG-TATTCCATGCATCTACTGTAT 391
||||||||||||||||||||||||||||||||| | |||| |||||||| | |||||
Sbjct 301 GACATTTACGATGATGACAGAGATGGTGTTCGTA-GTCATATTTCATGCATCAATTGTAT 359
Query 392 CTGGGATATAAGCAAA-AATGGGCCATGCAGGTTTAGTGAAAGAGATGATGCATTTAATA 450
|||||||||||||| | || |||||||||| |||||||||||| ||| ||||||||||||
Sbjct 360 CTGGGATATAAGCATACAA-GGGCCATGCATGTTTAGTGAAAGTGATCATGCATTTAATA 418
Query 451 TTTGTTATGACTGGAATGGAAATCGAAG-ATCATAA 485
| |||||||| |||||||| |||| ||| | |||||
Sbjct 419 TATGTTATGATTGGAATGGGAATCTAAGGA-CATAA 453
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24112390560
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5