BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg940699
Length=1168
Score E
Sequences producing significant alignments: (Bits) Value
AT5G12130.1 | Symbols: PDE149, ATTERC | integral membrane TerC ... 1687 0.0
> AT5G12130.1 | Symbols: PDE149, ATTERC | integral membrane TerC
family protein | chr5:3919594-3922485 FORWARD LENGTH=1505
Length=1505
Score = 1687 bits (913), Expect = 0.0
Identities = 1106/1194 (93%), Gaps = 34/1194 (3%)
Strand=Plus/Plus
Query 2 GGATTTGACGCAAAACGCAATGAGCTTAGCTTCAGTTATCCACCACGGAATTTTTGCTCC 61
||||||||| |||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 1 GGATTTGACACAAAACGCAATGAGCTTAGCTTCAGTTATCCACCACGGAATTCTCCCTCC 60
Query 62 GGCGAAATCGGATCGAATCTTTCTCACCATTCCGGTAGTT-CCGCCGGATTTCCGAGCTC 120
||| |||||||||||||||||||| ||||||||||| ||| |||||||||||| ||||||
Sbjct 61 GGCCAAATCGGATCGAATCTTTCTTACCATTCCGGT-GTTCCCGCCGGATTTCAGAGCTC 119
Query 121 GTGGATGGACTGAGTCT-C---GT-T-T-C-------T--CTCTC--GTTTCAGCTGCGA 162
||||||||||| ||||| | | | | | | ||||| | ||||||||| |
Sbjct 120 GTGGATGGACTAAGTCTCCTTTCTCTCTCCTTATAAATCCCTCTCTTGCTTCAGCTGCCA 179
Query 163 ATCGTCGTCTCTCTCATCTTCCTCCTATTTCTTGCTCCAGAGAAATCGATCAGGAAGAT- 221
|||||||||||||||||||||||||||| | || ||||||| || ||||||||||||
Sbjct 180 ATCGTCGTCTCTCTCATCTTCCTCCTATCGCGTGTTCCAGAGGTATTGATCAGGAAGATG 239
Query 222 --GATAAGGAGAGCAGAGAACTTCTACCACACAAAAACGATGAGAATG----CA----A- 270
|| ||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 240 AAGAGAAGGAGAGCAGAGAACTTCTACCACACAAAAACGATGAGAATGCAACCACTTCAC 299
Query 271 GCTCTTCGTCATCAGTAGATAGTGGAGGCTTGAACGATTATCAACAAGAAGAAACATACA 330
||||||| ||||||||||||||||||||| |||| |||||||||||||||||||| ||||
Sbjct 300 GCTCTTCTTCATCAGTAGATAGTGGAGGCCTGAAAGATTATCAACAAGAAGAAACTTACA 359
Query 331 AAACTTCCTTCAAGACTGTTGCCTTGTGTGTAGGTACTGCGGTGGCTTTTGGAATCGGAA 390
||||||||||||||||||||||||||||||| || ||||||||||| |||||||| ||||
Sbjct 360 AAACTTCCTTCAAGACTGTTGCCTTGTGTGTTGGCACTGCGGTGGCATTTGGAATTGGAA 419
Query 391 TAGGTTTGAAGGAAGGTGTTGGCAAGGCATCAGAGTTTTTCGCAGGCTATATATTGGAGC 450
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 420 TAGGTTTGAAGGAAGGTGTTGGCAAGGCTTCAGAGTTTTTCGCAGGCTACATATTGGAGC 479
Query 451 AAAGCTTGTCAGTGGACAACTTGTTTGTTTTTGTTCTTGTTTTCAAGTATTTCAAAGTGC 510
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 AAAGCTTGTCAGTGGACAACTTGTTTGTTTTTGTTCTTGTTTTCAAGTATTTCAAAGTGC 539
Query 511 CACCCATGTATCAGAATAAGGTACTTACCTACGGTATAGCTGGTGCAATTGTCTTCCGTT 570
||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 540 CACTCATGTATCAGAATAAGGTACTTACCTACGGTATAGCTGGTGCAATTGTTTTCCGTT 599
Query 571 TCACGCTCATATTACTAGGAACAGCTACTCTTCAGAAATTTGAAGCAGTCAATCTACTGC 630
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 600 TCACGCTCATTTTACTAGGAACAGCTACTCTTCAGAAATTTGAAGCAGTCAACCTACTGC 659
Query 631 TTGCTGCTGTGCTTCTT-TATTCATCTTTCAAGTTATTTGCAAGTGAAGAAGATGATACA 689
|||||||||| | |||| ||||| || |||||||||||||||||||||||||||||||||
Sbjct 660 TTGCTGCTGTAC-TCTTATATTCGTCATTCAAGTTATTTGCAAGTGAAGAAGATGATACA 718
Query 690 GATCTATCCGACAACTTCATTGTAAAGACATGCCAGAGATTTATTCCTGTCACATCAAGT 749
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 GATCTATCGGACAACTTCATTGTAAAGACATGCCAGAGATTTATTCCTGTCACATCAAGT 778
Query 750 TACGATGGAAACCGGTTTTTCACAAAGCATGATGGCATTTTGAAAGCCACACCATTGCTA 809
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 TACGATGGAAATCGATTTTTCACAAAGCATGATGGCATTTTGAAAGCCACACCATTGCTA 838
Query 810 CTTACAGTAGCAGTGATCGAGCTCAGTGACATAGCATTTGCGGTTGACTCGATACCAGCT 869
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 839 CTTACAGTAGCAGTGATCGAGCTCAGTGACATAGCATTTGCGGTTGACTCAATACCAGCT 898
Query 870 GTTTTTGGCGTCACAAGGGATCCTTTTATTGTCTTGACCTCTAATCTCTTTGCAATCCTA 929
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 899 GTTTTTGGCGTCACAAGGGATCCTTTTATTGTCTTGACTTCTAATCTCTTTGCAATCCTA 958
Query 930 GGACTAAGGTCTCTCTATACACTTATTTCTGAAGGAATGGACGAGCTAGAATACTTGCAG 989
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 959 GGACTAAGGTCTCTCTATACACTGATTTCTGAAGGAATGGACGAGCTGGAATACTTGCAG 1018
Query 990 CCATCAATAGCAGTTGTTCTTGGCTTCATAGGATTCAAGATGATCCTTGATTTCTTTGGG 1049
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1019 CCATCAATAGCAGTTGTTCTTGGCTTCATAGGAGTCAAGATGATCCTTGATTTCTTTGGC 1078
Query 1050 TTCCACGTATCGACTGAGGCATCACTTGGTGTCGTGGCGCTTTCTCTCGGCACAGGAGTA 1109
|||||| |||| || |||||||||||||||||||| || ||||||||| | || ||||||
Sbjct 1079 TTCCACATATCAACAGAGGCATCACTTGGTGTCGTTGCACTTTCTCTCAGTACCGGAGTA 1138
Query 1110 CTGTTGAGCCTAACAAACAAATCCAGCGACAGCTAACTAAGAACTGAGAACTGA 1163
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1139 CTGTTGAGCCTAACAAACAAATCCAGCGACAGCTAACTAAGAACTGAGAGCTGA 1192
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57329022390
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5