BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg940704
Length=1186
Score E
Sequences producing significant alignments: (Bits) Value
AT5G38270.1 | Symbols: | F-box family protein | chr5:15289032-... 743 0.0
AT2G03560.1 | Symbols: | F-box family protein with a domain of... 599 2e-170
AT2G03610.1 | Symbols: | F-box family protein | chr2:1099070-1... 182 9e-45
> AT5G38270.1 | Symbols: | F-box family protein | chr5:15289032-15290252
FORWARD LENGTH=1221
Length=1221
Score = 743 bits (402), Expect = 0.0
Identities = 919/1155 (80%), Gaps = 89/1155 (8%)
Strand=Plus/Plus
Query 20 AAA-TGTCTGAAAATCAAGATTGGTCCAATCATTGTGCCGATCTTTTAC-GTCCGATAAT 77
||| ||| || |||||| ||||||||||| | |||| ||||| | |||| || |||| |
Sbjct 43 AAAGTGTTTGTAAATCACGATTGGTCCAAACTTTGTCCCGATATCTTACGGT-CGATCCT 101
Query 78 CGAAAGCTTGAGCACTATTGATTATCACCGAGCaaaaaaaGTTTGCTCAGATTGGTACTC 137
||||||||||||| ||| ||||| |||||||||||||| ||||||||||||||||| ||
Sbjct 102 CGAAAGCTTGAGCTCTACTGATTTTCACCGAGCAAAAACTGTTTGCTCAGATTGGTATTC 161
Query 138 CGTTTGGAAAACATGCGTGAAGCGGCCTCTGTATCCATGGC-AATTCATATACCAT-GAT 195
|||||||||||||||||| |||||| | |||||||| | |||| || | | |
Sbjct 162 AAATTGGAAAACATGCGTGAA---GCCTCTTTGTCCATGGCGGA-TCATGTA-CGTAAAA 216
Query 196 GATTC-TTCGAGT-TTGTTCGATCCCGGAGAGGACAAGATTTACAACACGAA-ACTCGTT 252
||||| || || | |||||| | |||||||| |||||||||||||| | ||| | ||||
Sbjct 217 GATTCATT-GA-TGTTGTTCAAACCCGGAGAAGACAAGATTTACAA-AGGAACAAACGTT 273
Query 253 GGAATCTCCGACAAAAGCTACTATATGGCTAGCTTCGGAAATTGCCTATTGATGGTAGAT 312
||| ||||| || | ||||| ||||||||||||| |||||| || || ||||||||||||
Sbjct 274 GGACTCTCCAACGACAGCTATTATATGGCTAGCTCCGGAAACTGGCTCTTGATGGTAGAT 333
Query 313 TCTCTTCTCCATTTCTATATCGTTAACATGTTAACGTGCGAAAGAATCAATCTTCCATCA 372
|||| |||| |||||| || ||||| |||||||| || ||||||| |||||||||||
Sbjct 334 TCTCATCTCGGTTTCTACATTTTTAACCTGTTAACGAGCAAAAGAATTGATCTTCCATCA 393
Query 373 ATGGAGACGTCAATACGCGGTGGGCACGTGAGATT----C-AAACGA--AGCGGT-GA-- 422
|||||| | ||||| |||||||| | |||||||| | |||| | ||| | ||
Sbjct 394 ATGGAGTCTTCAATTCGCGGTGGAAAAGTGAGATTCGAGCAAAACCACGAGC-ATGGATT 452
Query 423 CGAGTGGGGTTACTTCGTTG-ACTTTTATCGTAAGGAT-CGAGTGTCTAAAGA-CATCTT 479
| | ||||| |||| || | || || |||||||| | | ||||| ||| | | | |
Sbjct 453 CAACTGGGGACACTTTGTCGAAC-CTTCTCGTAAGGTTAC-CGTGTC-AAAAATAACCAT 509
Query 480 TGGAAGCGAAAGAT-CAGCTGTTCTGTGGATAAACGAAAGAACAGGAGATTATT-TCGTT 537
| | ||||| | |||||||||||||||| |||| ||||||||||||| || | |||
Sbjct 510 CACACGGGAAAG-TAGAGCTGTTCTGTGGATAGACGAGAGAACAGGAGATT-TTGTGGTT 567
Query 538 GCTTGGATTTTCAA-TAAGC-TTGAGTTGTTCACACACAAGAAAGGAGATGATTATTGGT 595
||||||||||| || | | | || | |||||| || |||||||||||||||||| ||||
Sbjct 568 GCTTGGATTTTTAACT-ATCGTT-ACTTGTTCTCATACAAGAAAGGAGATGATTCGTGGT 625
Query 596 GGAATTGGTAT-A-C-----AAGA-GG--TGC--AAATTTGGGTTTCTTGGATTTGGCTT 643
|||| ||| || | | || | || || ||||| |||| |||||||||||||
Sbjct 626 GGAACTGGAATAACCATTGGAATATGGAAAGCTTGAATTTAAGTTTTTTGGATTTGGCTT 685
Query 644 ATAAG-AACAGCAAGCTTTATCTGTATATTTCTGATGA-TCACATC-AAGATTGTCGATT 700
| || ||||||||||||||| | || ||| || | || ||||||| ||| |||| ||||
Sbjct 686 A-CAGAAACAGCAAGCTTTATATCTACATTACT-AAGAGTCACATCAAAG-TTGTTGATT 742
Query 701 TCTCTGGAGATTG-CCCCAAAGAAG-AAGTCGAGAAAAACCCGTATTGGGATCATCCGTT 758
|||||||| | || |||| ||||| || |||| ||||||||||||||||| ||||||||
Sbjct 743 TCTCTGGA-AATGATCCCATAGAAGTAA-TCGATAAAAACCCGTATTGGGAACATCCGTT 800
Query 759 T-GATTACGTT--TCAAAACAGTGGGAGTACGTTTGGAAGACGAGAATAGTGATTCAGAA 815
| || ||| || ||||| || |||| ||| || |||| |||||||| |||||||||
Sbjct 801 TCGA-TAC-TTAACCAAAAAAG-GGGAATACATTAATAAGAGGAGAATAGCGATTCAGAA 857
Query 816 AACAGGAGAGGTTTTCATCATCTTGAGTTTATTAG-A-AAAGCTATTAAAAGAGACACAT 873
| ||||||| ||||| || ||||||||| |||||| | |||| || |||||||| | |
Sbjct 858 ATCAGGAGACGTTTTGATTATCTTGAGTGTATTAGCACAAAG--ATCAAAAGAGAAAGTT 915
Query 874 TTGTTTTACATCTTTAAGATGAATTTTGAGAGTAACAA-ATGGGAAAGAGTAGATTCTAT 932
|| ||||||||||||||||||||| ||| |||||| || ||||||||||||||| |||||
Sbjct 916 TTATTTTACATCTTTAAGATGAATCTTGCGAGTAA-AATATGGGAAAGAGTAGAATCTAT 974
Query 933 TGGAGATGATGAGATGTTGATCTTTGGTCATGGGGTTAC-ACTAAGAGCACCGGTTCAAG 991
||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 975 TGGAGATGATGAGATGTTGATCTTTGGTCATGGGGTTACGA-TAAGAGCACCGGTTCAAG 1033
Query 992 AAGTTGGTGATGGAATCAAGAGTGGTTCAATCTGTTTCGTTGAAGATGACCTTTTTTGGC 1051
| ||||||||||||||||||||||||||||| |||||||| | | |||| | | |||
Sbjct 1034 ATGTTGGTGATGGAATCAAGAGTGGTTCAATATGTTTCGTC-A-G-TGACGTAT---GGC 1087
Query 1052 TAA-ATATTAGTCTTC--CT--T-CGAATTGTGGTGTCTTCGAACTTGCCACAAGTAGAA 1105
| |||||| ||| | || | | ||||| ||||||||||| ||||| ||||||| ||
Sbjct 1088 CACCATATTATTCTCCTGCTGCTACAAATTGGGGTGTCTTCGATCTTGCAACAAGTATAA 1147
Query 1106 TCAAATGGTTTAAGA 1120
||||||||| |||||
Sbjct 1148 TCAAATGGTCTAAGA 1162
> AT2G03560.1 | Symbols: | F-box family protein with a domain
of unknown function (DUF295) | chr2:1079639-1081376 FORWARD
LENGTH=1362
Length=1362
Score = 599 bits (324), Expect = 2e-170
Identities = 845/1080 (78%), Gaps = 102/1080 (9%)
Strand=Plus/Plus
Query 20 AAATGTCTGAAAATCAAGATTGGTCCAATCATTGTGCC-GATCTTTT-ACGTCCGATAAT 77
|||||||||| ||||| ||||||||||| | |||| || ||| |||| | | ||| ||
Sbjct 44 AAATGTCTGAGAATCATGATTGGTCCAAGCTTTGT-CCTGATATTTTGA-GAAAGATCAT 101
Query 78 CGAAAGCTTGAGCACTATTGATTATCACCGAGCaaaaaaaGTTTGCTCAGATTGGTACTC 137
||||||||||||| || | |||| | |||||||||||| ||||||||||||||||||||
Sbjct 102 CGAAAGCTTGAGCTCTCTAGATTTTTACCGAGCAAAAATTGTTTGCTCAGATTGGTACTC 161
Query 138 CGTTTGGAAAACATGCGTGAAGCGGCCTCTGTATCCATGGC--A--AT-TCATATA-CCA 191
|||||||||||||||||| |||||||||||| |||||||| | || | ||| | | |
Sbjct 162 CGTTTGGAAAACATGCGTAAAGCGGCCTCTGCGTCCATGGCGGATCATAT-ATAGAGCAA 220
Query 192 TG-A-T-GA-T--T-CTTCGA--G-T-TTGTTCGATCCCGGA-GAGGACAAGATTTACAA 239
| | | | | | |||| | | | |||||||||||| || || ||||||||||| |
Sbjct 221 AGTATTATATTAGTACTTC-ATTGATGTTGTTCGATCCC-GACGAAGACAAGATTTA-TA 277
Query 240 CACGAAACTCGTTGGAATCTCCGACAAAAGCTACT-ATATGGCTAGCTTC-GGAAATTGC 297
| ||| || || ||| | || ||| | ||||| | | |||||||| || ||||| ||
Sbjct 278 -A-GAATCTTGTCGGAGTTTCTGACGAGAGCTA-TCGTTTGGCTAGC-TCTGGAAACTGG 333
Query 298 CTATTGATGGTAGATTCTCTTCTCCATTTCTATATCGTTAACATGTTAACGTGCGAAAGA 357
|| ||||||| |||||||| ||| |||||||||| |||||| |||||||| || ||||
Sbjct 334 CTCTTGATGGCAGATTCTCGTCTTGATTTCTATATTGTTAACCTGTTAACGGGCAAAAGG 393
Query 358 ATCAATCTTCCATCAATGGAGACGT-CAATACGCGGTGGGCACGTGAGA--T-T-CAAA- 411
|||||||||||| |||||||| | | ||| || |||| || | |||| | | ||||
Sbjct 394 ATCAATCTTCCACCAATGGAGTC-TAAAATTCGTGGTGCACAAGCGAGATTTGTGCAAAG 452
Query 412 CGAA-GCGGTGACGAGT-GGGGTTAC--TT-CGTTGAC--TT-TTA-TCGTA--AGGATC 460
| || | || ||| | || ||| || | ||||| || | | || || | ||
Sbjct 453 CAAATATTTTTACAAGTCGAGG-TACATTTGCTTTGACAATTGTAATTC-TATTCGTAT- 509
Query 461 GAGTGTCTAAAGACATCT-TTGGAA-GCGAAAGATCAGCTGTTCTGTGGATAAACGAAAG 518
|||| ||||| | | || ||| | ||||| ||||||||||||||||| |||| ||
Sbjct 510 AAGTG-AGAAAGA-A-GTATTCGAATCCAAAAGAGCAGCTGTTCTGTGGATAGACGAGAG 566
Query 519 AACAGGAGATTATTTCGTTGCTTGGATTTTCAATAAGC-TTGAGTTGTTCACACACAAGA 577
|| |||||||||||||||||||||||||| ||||||| || | ||||||||||||||||
Sbjct 567 GACGGGAGATTATTTCGTTGCTTGGATTTTTAATAAGCATT-ATTTGTTCACACACAAGA 625
Query 578 AAGGAGATGATTATTGGTGGAATTGGTATAC-AAGAGGTGC-AAATTTGGGTT-TCTTGG 634
|||||||||||| ||||| |||| ||| ||| || | ||| ||| || | ||||
Sbjct 626 AAGGAGATGATTCGTGGTG---TTGGAATAGGAAGTGGA-CTAAACCTGG-TTAT-TTGG 679
Query 635 ATTTGGCTTATAAGAACAGCAAGCTTTATCTGTATATTTCTGATGA-TCACATCAAGATT 693
|||||||||||||||||| |||||||||| | |||| | | ||| | | |||||||||||
Sbjct 680 ATTTGGCTTATAAGAACAACAAGCTTTATATCTATAATACCGATAACT-ACATCAAGATT 738
Query 694 GTCGATTTCTCTGGAGATTGCCCCAAAGAAGA-AGTCGAGAAA-AACCCGTATTGGGATC 751
| |||||||||||||||| ||| |||||||| | |||| ||| ||||||||| |||
Sbjct 739 TTTGATTTCTCTGGAGATTACCCTAAAGAAGATA-TCGA-AAATAACCCGTATCATAATC 796
Query 752 ATCCGT-TTGATTACGTTTCAAA-AC-AGTGGGA-GTACGTTTG-GAAGACGAGAATAGT 806
||| | || | ||| || | || || |||| || | |||| | | | ||||||||
Sbjct 797 GTCC-TCTTCAGTACATT-CGGGGACCAG-GGGAAGTCCTTTTGAGCA-A-GAGAATAGC 851
Query 807 GATTCAGAAAACAGGAGAGGTTTTCATCATCTTGAGT-TTATTAGAAAAGCTATTAAAAG 865
|||||||||| | ||||||||||| ||||||||||| |||| | ||| | ||| ||
Sbjct 852 GATTCAGAAATCGGGAGAGGTTTTGATCATCTTGAGAGTTAT-A-AAAGGTTAT-AA--- 905
Query 866 AGACACATTTGTTTTACATCTTTAAGATGAATTTTGAGAGTA-ACAAATGGGAAAGAGTA 924
| |||||||| |||||||| |||||||||||| ||| | |||||||||||||||
Sbjct 906 ---CTT-TTTGTTTTGGATCTTTAAAATGAATTTTGAGCGTAGA-AAATGGGAAAGAGTA 960
Query 925 GATTCTATTGGAGATGATGAGATG-TTGATCTTTGGTCATGGGGTTACACTAAGAGCACC 983
|||||||||||||||||||||||| || ||||| ||||||||| ||||| ||||||||||
Sbjct 961 GATTCTATTGGAGATGATGAGATGATT-ATCTTCGGTCATGGGCTTACAGTAAGAGCACC 1019
Query 984 GGTTCAAGA-AGTTGGTGATGGAATCAAGAGTGGTTCAATCTGTTTCGTTGAAGATGACC 1042
||||||||| | ||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 1020 GGTTCAAGATA-TTGGTGATGGAGTCAAGAGTGGTTCAATCTGTTTCGTTGAATATGACC 1078
> AT2G03610.1 | Symbols: | F-box family protein | chr2:1099070-1100202
FORWARD LENGTH=651
Length=651
Score = 182 bits (98), Expect = 9e-45
Identities = 162/191 (85%), Gaps = 12/191 (6%)
Strand=Plus/Plus
Query 937 GATG-ATGAGATGTTGATCTTTGGTCATGGGGTTACACTAAGAGCACCGGTTCAAGAAGT 995
|||| |||||||||||||||||||||||||||||||| | ||||||| ||||| || ||
Sbjct 417 GATGAATGAGATGTTGATCTTTGGTCATGGGGTTACAATGAGAGCACAAGTTCATGATGT 476
Query 996 TGGTGATGGAATCAAGAGTGG-TTCAATCTGTTTCGTTGAAGATGACCTTTTTTGGCTAA 1054
|||||||||||||||||| || |||||||||||||||||||||||| |||| |||
Sbjct 477 TGGTGATGGAATCAAGAG-GGATTCAATCTGTTTCGTTGAAGATGATCTTT---GGCCGG 532
Query 1055 ATATT-AGTCTTCCTTCGAATTGTGGTGTCTTCGAA-CTTGCCACAAGTAGAATCAA-AT 1111
|| || | || |||||| ||||| ||| ||||| || ||||||||||||||||| || ||
Sbjct 533 ATTTTGA-TCGTCCTTCAAATTGCGGTATCTTC-AATCTTGCCACAAGTAGAAT-AACAT 589
Query 1112 GGTTTAAGAGA 1122
|| |||||||
Sbjct 590 GGCCTAAGAGA 600
Score = 161 bits (87), Expect = 1e-38
Identities = 165/200 (83%), Gaps = 16/200 (8%)
Strand=Plus/Plus
Query 634 GATTTGGCTTATAAGAACAGCAAGCTTTATCTGTATATTTCTG-ATGATCACATCAAGAT 692
||| ||||||||||||||||||||||||||||||||| || || || |||||||||||||
Sbjct 223 GATATGGCTTATAAGAACAGCAAGCTTTATCTGTATACTT-TGGATCATCACATCAAGAT 281
Query 693 TG-TCGATTTCTCTGGAGATTGC-CCCAAAGAAGAAGTCGA--GAAAAACCCGTATTGGG 748
| | |||||||||||||||| | ||||||||||||| || || ||||||||||| |
Sbjct 282 TTAT-GATTTCTCTGGAGATT-CTCCCAAAGAAGAAG--GATTGACAAACCCGTATTCGA 337
Query 749 ATCATCCGTTT-GATTACGTTTCA-AAACAGTGGGAGTACGTTTGGAAGACGAGAATAGT 806
||||||| ||| | || || | | |||| | ||| ||| ||||||||| || ||||||
Sbjct 338 ATCATCCATTTCGCTT-CGATG-AGAAACCGCAGGAATACATTTGGAAGAGGAAAATAGT 395
Query 807 GATT-CAGAAAACAGGAGAG 825
|||| ||||| ||||||||
Sbjct 396 GATTGCAGAAT-CAGGAGAG 414
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58232632200
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5