BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg940706

Length=419
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G12190.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) fami...   671    0.0  


> AT5G12190.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family 
protein | chr5:3940532-3941205 REVERSE LENGTH=674
Length=674

 Score =  671 bits (363),  Expect = 0.0
 Identities = 397/413 (96%), Gaps = 3/413 (1%)
 Strand=Plus/Plus

Query  3    aagaagaagaagagaagCTATGACAACAATCAGTCTTCGCAAGAGTAACACCAGACTCCC  62
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  82   AAGAAGAAGAAGAGAAGCTATGACAACAATCAGTCTTCGCAAGAGTAACACCAGACTCCC  141

Query  63   ACCGGAAGTGAATCGCGTGCTCTACGTTCGTAACCTTCCCTTTAACATAACGAGCGAGGA  122
            |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct  142  ACCGGAGGTGAATCGCGTGCTCTACGTTCGTAACCTTCCCTTTAACATAACGAGCGAAGA  201

Query  123  GATGTACGATATCTTCGGCAAGTACGGCGCGATCCGCCAGATTCGAATCGGTTGTGACAA  182
            |||||||||||||||||||||||||||||| || |||||||||||||||||||| |||||
Sbjct  202  GATGTACGATATCTTCGGCAAGTACGGCGCAATTCGCCAGATTCGAATCGGTTGCGACAA  261

Query  183  GGCGACGAAAGGTACAGCCTTCGTCGTTTACGAGGATATCTACGACGCCAAGAACGCCGT  242
            ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct  262  GGCGACGAAAGGTACTGCCTTCGTCGTTTACGAGGATATCTACGATGCCAAGAACGCCGT  321

Query  243  CGACCATCTCTCTGGCTTCAATGTCGCGAATCGGTACCTAATCGTGTTGTATTACCAGCA  302
            ||||||||||||||||||||| |||||||||||||||||||||||||| || ||||||||
Sbjct  322  CGACCATCTCTCTGGCTTCAACGTCGCGAATCGGTACCTAATCGTGTTATACTACCAGCA  381

Query  303  CGCGAAGATGAGCAAGAAGTTTGACCAGAAGAAGAGTGAAGATGAGATTACAAAGTTGCA  362
            |||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct  382  CGCGAAGATGAGCAAGAAGTTTGACCAGAAGAAGAGTGAAGATGAGATCACCAAGTTGCA  441

Query  363  GGAGAAGTATGGAGTCTCTACCAAAGATAAGTAATAATTGTCCTCGAATTCGA  415
            |||||||||||||||||||||||||||||||||||  | ||||| ||||||||
Sbjct  442  GGAGAAGTATGGAGTCTCTACCAAAGATAAGTAAT--T-GTCCTTGAATTCGA  491



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19855760855


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5