BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg940712

Length=352
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G12235.1 | Symbols: CLE22 | CLAVATA3/ESR-RELATED 22 | chr5:3...   488    1e-137


> AT5G12235.1 | Symbols: CLE22 | CLAVATA3/ESR-RELATED 22 | chr5:3957740-3958051 
FORWARD LENGTH=312
Length=312

 Score =  488 bits (264),  Expect = 1e-137
 Identities = 299/315 (95%), Gaps = 6/315 (2%)
 Strand=Plus/Plus

Query  21   ATGGGAAATTACTACTCTAGAAGAAATTCTAGGAAACACATCACTACTGTTGCCTTGATC  80
            |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct  1    ATGGGAAATTACTACTCTAGAAGAAAATCTAGGAAACACATCACTACAGTTGCCTTGATC  60

Query  81   ATCCTTCTTCTTCTTTTGTTTTTGTTTCTTTACGCTAAAGCTTCATCATCCTCTTCTCAT  140
            ||||||||||||||||||||| ||||||||||||||||||| |  ||||| ||||||| |
Sbjct  61   ATCCTTCTTCTTCTTTTGTTTCTGTTTCTTTACGCTAAAGC-T--TCATCGTCTTCTCCT  117

Query  141  AATATACATCATCACTCAACTCATGGAAGCTTGAAGAAACCTGGAATTTTCGATCCAAAG  200
            ||||||||||||||||||||||||||||||||||||||| |||||| ||| |||||||||
Sbjct  118  AATATACATCATCACTCAACTCATGGAAGCTTGAAGAAATCTGGAAATTTGGATCCAAAG  177

Query  201  CTTCATGATCTTGACTCCAATGCTGCG---TCAAGAGGATCAAAATATACTAATTATGAA  257
            |||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||
Sbjct  178  CTTCATGATCTTGACTCCAATGCTGCGTCATCAAGAGGATCAAAATATACTAATTATGAA  237

Query  258  GGTGGTGGTGAAGATGTTTTTGAAGATGGCAAGAGAAGGATCTTCACAGGTCCTAATCCT  317
            ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| 
Sbjct  238  GGTGGTGGTGAAGATGTTTTTGAAGATGGCAAGAGAAGGGTCTTCACAGGTCCTAATCCA  297

Query  318  TTGCACAATAGATAA  332
            |||||||||||||||
Sbjct  298  TTGCACAATAGATAA  312



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16487821672


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5