BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg940713

Length=331
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G12240.1 | Symbols:  | unknown protein; Has 1807 Blast hits ...   279    8e-75


> AT5G12240.1 | Symbols:  | unknown protein; Has 1807 Blast hits 
to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; 
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other 
Eukaryotes - 339 (source: NCBI BLink). | chr5:3958901-3960845 
REVERSE LENGTH=794
Length=794

 Score =  279 bits (151),  Expect = 8e-75
 Identities = 163/169 (96%), Gaps = 0/169 (0%)
 Strand=Plus/Plus

Query  159  AAATTTTGGGAAAAGCTGAAAGCGGCTGCTGAGAAGAAGGTTGGTGAGGTTGAAGCAGAG  218
            |||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct  423  AAATTTTGGGAAAATCTGAAAGCGGCTGCTGAGAAGAAGGTTGGTGGGGTTGAAGCAGAG  482

Query  219  AGGTTTTGCAAGGCTTTCGAGAAACTCCACAAGAAACTTGTGTATGAAGAATTGGATCCA  278
            || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  483  AGATTTTGCAAGGCTTTCGAGAAACTCCACAAGAAACTTGTGTATGAAGAATTGGATCCA  542

Query  279  GAAGCTGCAAAGCGATATTTAGTAAACTCTTAAATTTGTGTCTTCTATA  327
            ||||||||||||||||||||| |||||||||||| || |||||||||||
Sbjct  543  GAAGCTGCAAAGCGATATTTACTAAACTCTTAAACTTCTGTCTTCTATA  591


 Score =  121 bits (65),  Expect = 5e-27
 Identities = 80/87 (92%), Gaps = 2/87 (2%)
 Strand=Plus/Plus

Query  1    ATCCAAGGAAAAA-GGAAGCCATGGACGACCAAGAGTTTCGTAGTCTCCTCGATCTCTTC  59
            ||| || |||||| ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  49   ATCGAA-GAAAAAGGGAAGCCATGGACGACCAAGAGTTTCGTAGTCTCCTCGACCTCTTC  107

Query  60   CCCGTCGTACGCTCTCGCGACCACCGT  86
            || |||||||| ||||| |||||||||
Sbjct  108  CCAGTCGTACGTTCTCGTGACCACCGT  134



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15432198943


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5