BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg940723
Length=703
Score E
Sequences producing significant alignments: (Bits) Value
AT5G12340.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1070 0.0
> AT5G12340.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G28190.1);
Has 30201 Blast hits to 17322 proteins in 780 species: Archae
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink). | chr5:3992948-3993610 REVERSE LENGTH=663
Length=663
Score = 1070 bits (579), Expect = 0.0
Identities = 639/667 (96%), Gaps = 8/667 (1%)
Strand=Plus/Plus
Query 21 ATGGGAAGATCTCTAATCAATTCTTGTTTTCCGATAATCCGTAGACGCCAAGGAATAGTC 80
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGGAAGATCTCTAATCAATTCTTGTTTTCCGATAATCCGTAGACGCCAAGGAATAGTC 60
Query 81 ACGCTCT-TTTTCTTTGAGCATGGATCAACCAAAACCCTATGTGGATTCAAGAAACATGT 139
||||| | ||||||||||||||| |||||| |||||||||||||| ||||||||||||||
Sbjct 61 ACGCT-TGTTTTCTTTGAGCATGTATCAACAAAAACCCTATGTGGCTTCAAGAAACATGT 119
Query 140 TGCTGGAGAAATCATGTTCGAGTTTCCTGATCAAATCGTGTGCCATGCAGATTCTTTCTT 199
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 120 TGCTGGAGAAATCATGTTTGAGTTTCCTGATCAAATCGTGTGCCATGCAGATTCTTT-TT 178
Query 200 -CATCGGTCGTCAGATTCCAGCTCTAGCCATGGACGACTATCTAATCCCAGGTCAAACCT 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 179 ACATCGGTCGTCAGATTCCAGCTCTAGCCATGGACGACTATCTAATCCCAGGTCAAACTT 238
Query 259 ATTTTGTCTTACCGATCGAACGTTTTGC-ATACAGAATCTTAACCACTTCGTGTCTCTCA 317
|||| ||||||||||||||||||||| | ||||| |||||||||||||||||||||||||
Sbjct 239 ATTTCGTCTTACCGATCGAACGTTTT-CAATACAAAATCTTAACCACTTCGTGTCTCTCA 297
Query 318 ATCTTCAACTCTAATCTTGAAAACGTTCGGTCAAACACTCCACCGTTGAATTTCACGGCG 377
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 298 ATCTTCAACTCTAATCTTGAAAACGTTCGGTCAAACACTCCACCGTTGAATTTCACTGCG 357
Query 378 CCGTCCAGTCCACCGCCGTTTGAGTATACTCAAGGACCAAACGGAGAGATTCTGATAAAA 437
||||| |||||||| |||||||||||| |||| |||||||||||| ||||||||||||||
Sbjct 358 CCGTCGAGTCCACCACCGTTTGAGTATTCTCAGGGACCAAACGGAAAGATTCTGATAAAA 417
Query 438 GTTTCTCCGGAGTTTATCATTAGTCTTATATGTAAAAACAGAAACATCAGAGAAGAAGAA 497
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 GTTTCTCCGGAGTTTATCATTAGTCTTATATGTAAAAACAGAAACATCAGAGAAGAAGAA 477
Query 498 GCCACAAGTTGTGGTGAAAACAGTACGATCTGTAATTCTCCCGAGTTAAAGAAGCAGTAT 557
|||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct 478 GCCACAAGTTGTGGTGAAAACAGTGCGATTTGTAATTCTCCCGAGTTAAAGAAGCAGTAT 537
Query 558 GATCAGCTTGTCGGAAC-ACGAGAGCACATGTGGTCACCGAATTTGCAGACGATCTCCGA 616
||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 538 GATCAGCTTGTTGGAACGA-GAGAGCACATGTGGTCACCGAATTTGCAGACGATCTCCGA 596
Query 617 GCATAAGATTAGGGTTTCTCCATTAAGATTCTTCGGTCTTAATCGGAGGCAAGAAGAAGT 676
||||||||||||||||||||||||||| ||||||||||| ||||||| |||||| |||||
Sbjct 597 GCATAAGATTAGGGTTTCTCCATTAAGGTTCTTCGGTCTAAATCGGAAGCAAGATGAAGT 656
Query 677 GAATTGA 683
|||||||
Sbjct 657 GAATTGA 663
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34058751666
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5