BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg940723 Length=703 Score E Sequences producing significant alignments: (Bits) Value AT5G12340.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1070 0.0 > AT5G12340.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G28190.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:3992948-3993610 REVERSE LENGTH=663 Length=663 Score = 1070 bits (579), Expect = 0.0 Identities = 639/667 (96%), Gaps = 8/667 (1%) Strand=Plus/Plus Query 21 ATGGGAAGATCTCTAATCAATTCTTGTTTTCCGATAATCCGTAGACGCCAAGGAATAGTC 80 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGGGAAGATCTCTAATCAATTCTTGTTTTCCGATAATCCGTAGACGCCAAGGAATAGTC 60 Query 81 ACGCTCT-TTTTCTTTGAGCATGGATCAACCAAAACCCTATGTGGATTCAAGAAACATGT 139 ||||| | ||||||||||||||| |||||| |||||||||||||| |||||||||||||| Sbjct 61 ACGCT-TGTTTTCTTTGAGCATGTATCAACAAAAACCCTATGTGGCTTCAAGAAACATGT 119 Query 140 TGCTGGAGAAATCATGTTCGAGTTTCCTGATCAAATCGTGTGCCATGCAGATTCTTTCTT 199 |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || Sbjct 120 TGCTGGAGAAATCATGTTTGAGTTTCCTGATCAAATCGTGTGCCATGCAGATTCTTT-TT 178 Query 200 -CATCGGTCGTCAGATTCCAGCTCTAGCCATGGACGACTATCTAATCCCAGGTCAAACCT 258 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 179 ACATCGGTCGTCAGATTCCAGCTCTAGCCATGGACGACTATCTAATCCCAGGTCAAACTT 238 Query 259 ATTTTGTCTTACCGATCGAACGTTTTGC-ATACAGAATCTTAACCACTTCGTGTCTCTCA 317 |||| ||||||||||||||||||||| | ||||| ||||||||||||||||||||||||| Sbjct 239 ATTTCGTCTTACCGATCGAACGTTTT-CAATACAAAATCTTAACCACTTCGTGTCTCTCA 297 Query 318 ATCTTCAACTCTAATCTTGAAAACGTTCGGTCAAACACTCCACCGTTGAATTTCACGGCG 377 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 298 ATCTTCAACTCTAATCTTGAAAACGTTCGGTCAAACACTCCACCGTTGAATTTCACTGCG 357 Query 378 CCGTCCAGTCCACCGCCGTTTGAGTATACTCAAGGACCAAACGGAGAGATTCTGATAAAA 437 ||||| |||||||| |||||||||||| |||| |||||||||||| |||||||||||||| Sbjct 358 CCGTCGAGTCCACCACCGTTTGAGTATTCTCAGGGACCAAACGGAAAGATTCTGATAAAA 417 Query 438 GTTTCTCCGGAGTTTATCATTAGTCTTATATGTAAAAACAGAAACATCAGAGAAGAAGAA 497 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 418 GTTTCTCCGGAGTTTATCATTAGTCTTATATGTAAAAACAGAAACATCAGAGAAGAAGAA 477 Query 498 GCCACAAGTTGTGGTGAAAACAGTACGATCTGTAATTCTCCCGAGTTAAAGAAGCAGTAT 557 |||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| Sbjct 478 GCCACAAGTTGTGGTGAAAACAGTGCGATTTGTAATTCTCCCGAGTTAAAGAAGCAGTAT 537 Query 558 GATCAGCTTGTCGGAAC-ACGAGAGCACATGTGGTCACCGAATTTGCAGACGATCTCCGA 616 ||||||||||| ||||| | |||||||||||||||||||||||||||||||||||||||| Sbjct 538 GATCAGCTTGTTGGAACGA-GAGAGCACATGTGGTCACCGAATTTGCAGACGATCTCCGA 596 Query 617 GCATAAGATTAGGGTTTCTCCATTAAGATTCTTCGGTCTTAATCGGAGGCAAGAAGAAGT 676 ||||||||||||||||||||||||||| ||||||||||| ||||||| |||||| ||||| Sbjct 597 GCATAAGATTAGGGTTTCTCCATTAAGGTTCTTCGGTCTAAATCGGAAGCAAGATGAAGT 656 Query 677 GAATTGA 683 ||||||| Sbjct 657 GAATTGA 663 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 34058751666 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5