BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg940724
Length=3271
Score E
Sequences producing significant alignments: (Bits) Value
AT5G12350.1 | Symbols: | Regulator of chromosome condensation ... 5572 0.0
AT5G19420.2 | Symbols: | Regulator of chromosome condensation ... 3415 0.0
> AT5G12350.1 | Symbols: | Regulator of chromosome condensation
(RCC1) family with FYVE zinc finger domain | chr5:3995342-4000801
FORWARD LENGTH=3931
Length=3931
Score = 5572 bits (3017), Expect = 0.0
Identities = 3190/3275 (97%), Gaps = 6/3275 (0%)
Strand=Plus/Plus
Query 1 CTTCGTTGAGA----TTTTTGTGTATGTCGAGAAACGGAAGGATGGCTTCGGATCTTAGT 56
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 424 CTTCGTTGAGATTTTTTTTTGTGTATGTCGAGAAACGGAAGGATGGCTTCGGATCTTAGT 483
Query 57 AGAGCTGGTCCTGTGGAGAGAGATATCGAGCAGGCTATCATTGCCCTGAAAAAGGGTGCT 116
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 484 AGAGCTGGTCCTGTGGAGAGAGATATCGAGCAGGCTATCATTGCCCTGAAAAAGGGAGCT 543
Query 117 TACTTGCTAAAGTATGGGAGAAGAGGGAAACCTAAGTTCTGCCCATTTCGCCTTTCTAAT 176
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 544 TACTTGCTAAAGTATGGAAGAAGAGGGAAACCTAAGTTCTGCCCATTTCGCCTTTCTAAT 603
Query 177 GATGAAACTGTTTTGATATGGTTCTCTGGAAACGAGGAGAAACATCTGAAGCTGAGCCAT 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 604 GATGAAACTGTTTTGATATGGTTCTCTGGAAACGAGGAGAAACATCTGAAGCTGAGCCAT 663
Query 237 GTTTCTAGGATCATATCTGGACAACGCACTCCTATTTTTCAGAGGTATCCTCGTCCCGAG 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 664 GTTTCTAGGATCATATCTGGACAACGCACTCCTATTTTTCAGAGGTATCCTCGTCCCGAG 723
Query 297 AAGGAATATCAGTCGTTTTCACTAATATATAGTGAGAGGTCTTTGGATTTGATATGCAAG 356
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 724 AAGGAATATCAGTCGTTTTCACTAATATATAGTGAGAGGTCTTTGGATGTGATATGTAAG 783
Query 357 GATAAAGATGAGGCTGAGGTGTGGTTTACTGGTCTTAAGGCCTTGATTTCGCATTGCCAT 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 784 GATAAAGATGAGGCTGAGGTGTGGTTTACTGGTCTTAAGGCCTTGATTTCGCATTGCCAT 843
Query 417 CAAAGAAACAGGAGAACTGAATCAAGAAGTGACGGTACACCATCTGAAGCTAATAGCCCA 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 844 CAAAGAAACAGGAGAACTGAATCAAGAAGTGACGGTACACCATCTGAAGCTAATAGCCCA 903
Query 477 AGAACATATACCCGGAGAAGCTCTCCTTTACATTCTCCATTTAGTAGCAATGACAGTTTG 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 904 AGAACATATACCCGGAGAAGCTCTCCTTTACATTCTCCATTTAGTAGCAATGACAGTTTG 963
Query 537 CAGAAGGATGGTTCTAATCACCTTCGTATTCATAGTCCATTTGAGAGCCCACCTAAGAAT 596
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 964 CAGAAGGATGGTTCTAATCACCTTCGTATTCATAGTCCATTTGAGAGCCCGCCTAAGAAT 1023
Query 597 GGGCTTGACAAGGCATTTTCGGACATGGCATTATATGCAGTTCCTCCAAAAGGATTTTAC 656
|| || ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1024 GGCCTCGACAAGGCATTTTCGGACATGGCTTTATATGCAGTTCCTCCAAAAGGATTTTAC 1083
Query 657 CCCTCAGATTCTGCAACTATTTCTGTTCATTCTGGAGGCTCGGATAGCATGCATGGACAT 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1084 CCCTCAGATTCTGCAACTATTTCTGTTCATTCTGGAGGCTCGGATAGCATGCATGGACAT 1143
Query 717 ATGAGGGGTATGGGGATGGATGCTTTTAGAGTTAGTATGTCAAGTGCTGTTAGTTCCTCG 776
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1144 ATGAGGGGTATGGGCATGGATGCCTTTAGAGTTAGTATGTCAAGTGCTGTTAGTTCCTCG 1203
Query 777 AGCCACGGTTCTGGTCATGATGATGGAGATGCGTTAGGAGATGTTTTCATCTGGGGAGAA 836
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1204 AGCCATGGTTCTGGTCATGATGATGGAGATGCATTAGGAGATGTTTTCATCTGGGGAGAA 1263
Query 837 GGCATAGGAGAAGGTGTTTTGGGTGGTGGAAACCGTAGAGTTGGAAGTTCGTTTGACATG 896
|||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||
Sbjct 1264 GGCATAGGAGAAGGTGTTTTGGGTGGTGGAAACCGTAGAGTTGGTAGTTCATTTGATATA 1323
Query 897 AAAATGGATTCCTTATTGCCAAAAGCTTTAGAATCTGCAATAGTACTGGACGTCCAAAAT 956
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1324 AAAATGGATTCCTTATTGCCAAAAGCTTTAGAATCTACAATAGTACTGGACGTCCAAAAT 1383
Query 957 ATTGCTTGTGGTGGACAACACGCTGTCCTTGTGACAAAACAAGGAGAAAGTTTTTCTTGG 1016
||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||
Sbjct 1384 ATTGCTTGTGGTGGACAGCACGCTGTCCTCGTGACAAAACAAGGGGAAAGTTTTTCTTGG 1443
Query 1017 GGAGAGGAATCTGAAGGCAGGCTTGGCCACGGTGTTGATTCCAATATTCAACAACCAAAG 1076
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1444 GGAGAGGAATCTGAAGGCAGGCTTGGCCACGGTGTTGATTCCAATATTCAACAACCAAAG 1503
Query 1077 CTCATTGATGCACTCAACACCACAAATATTGAGCTTGTAGCATGTGGTGAATTTCATAGT 1136
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1504 CTCATCGATGCACTCAACACCACAAATATTGAGCTTGTAGCATGTGGTGAATTTCATAGT 1563
Query 1137 TGTGCGGTTACCCTATCAGGGGATTTGTATACCTGGGGTAAAGGAGATTTTGGTGTTCTT 1196
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1564 TGTGCAGTTACCCTATCAGGGGATTTGTATACCTGGGGTAAAGGAGATTTTGGTGTTCTT 1623
Query 1197 GGACATGGAAATGAAGTCAGTCACTGGGTCCCTAAGAGGGTTAATTTTCTGCTGGAAGGG 1256
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1624 GGACATGGAAATGAAGTAAGTCACTGGGTCCCTAAGAGGGTTAATTTTCTGCTGGAAGGG 1683
Query 1257 ATACATGTATCATCCATTGCTTGTGGACCTTACCACACAGCAGTCGTTACATCTGCTGGG 1316
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1684 ATACATGTATCATCTATTGCTTGTGGACCTTACCACACAGCAGTCGTTACCTCTGCTGGG 1743
Query 1317 CAGTTGTTTACTTTTGGGGATGGGACCTTTGGTGTTTTGGGCCATGGAGACAAGAAAAGT 1376
||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||
Sbjct 1744 CAGTTGTTTACTTTTGGTGATGGGACCTTTGGTGTTTTAGGCCACGGAGACAAGAAAAGT 1803
Query 1377 GTTTTCATACCTCGGGAGGTAGACTCTTTGAAAGGTCTTCGCACTGTCCGGGCAGCTTGT 1436
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1804 GTTTTCATACCTCGGGAGGTAGACTCTTTGAAAGGTCTTCGCACTGTCCGGGCAGCTTGT 1863
Query 1437 GGTGTATGGCACACAGCAGCAGTTGTGGAAGTCATGGTTGGGAGCTCAAGCTCAAGTAAT 1496
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1864 GGTGTATGGCACACAGCAGCAGTTGTGGAAGTAATGGTTGGGAGCTCAAGCTCAAGTAAT 1923
Query 1497 TGCTCTTCTGGAAAGCTCTTTACATGGGGGGATGGTGATAAGGGTCGTCTTGGTCATGGT 1556
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1924 TGCTCTTCTGGAAAGCTCTTTACATGGGGTGATGGTGATAAGGGTCGTCTTGGTCATGGT 1983
Query 1557 AATAAAGAACCAAAACTTGTGCCTACCTGTGTTGCTGCTCTTGTTGAACCCAATTTTTGC 1616
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1984 AATAAAGAACCAAAACTTGTGCCTACCTGTGTTGCTGCTCTGGTTGAACCCAATTTTTGC 2043
Query 1617 CAAGTTGCATGTGGGCACAGTCTAACGGTTGCACTTACAACATCAGGCCATGTCTATACT 1676
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2044 CAAGTTGCATGTGGGCACAGTCTAACGGTTGCACTTACAACATCAGGCCATGTCTATACT 2103
Query 1677 ATGGGCAGTCCTGTATATGGTCAGCTTGGAAACTCACATGCAGATGGAAAA-CTTCCAAA 1735
|||||||||||||| ||||||||||||||||||||||||||||| |||||| || |||||
Sbjct 2104 ATGGGCAGTCCTGTCTATGGTCAGCTTGGAAACTCACATGCAGACGGAAAAACT-CCAAA 2162
Query 1736 CCGTGTCGAAGGTAAACTTCACAAGAGTTTTGTCGAAGAGATAGCCTGCGGTGCTTATCA 1795
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2163 CCGTGTCGAAGGTAAACTTCACAAGAGTTTTGTCGAAGAGATAGCCTGTGGTGCTTATCA 2222
Query 1796 TGTTGCAGTTTTAACTTCGAGGACTGAGGTTTACACTTGGGGAAAGGGATCAAATGGTAG 1855
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2223 TGTTGCAGTTTTAACTTCGAGGACTGAGGTTTACACTTGGGGAAAGGGATCAAATGGTAG 2282
Query 1856 ACTTGGTCATGGAGATGTAGATGATAGAAATTCCCCGACATTGGTTGAGTCGCTTAAGGA 1915
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2283 ACTTGGTCATGGAGATGTAGATGATAGAAATTCCCCGACATTGGTTGAGTCACTTAAGGA 2342
Query 1916 TAAACAGGTTAAAAGTATTGCCTGTGGCACTAACTTCACAGCAGCTGTCTGCATTCACAG 1975
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2343 TAAACAGGTGAAAAGTATTGCCTGTGGCACTAACTTCACAGCAGCTGTCTGCATTCACAG 2402
Query 1976 ATGGGCATCAGGGATGGACCAGTCCATGTGTTCAGGTTGCCGTCAGCCCTTCAGTTTTAA 2035
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2403 GTGGGCATCAGGGATGGACCAGTCCATGTGTTCAGGTTGCCGTCAGCCCTTCAGTTTTAA 2462
Query 2036 AAGAAAGAGACACAATTGCTATAATTGCGGACTAGTGTTTTGCCACTCATGCTCTAGTAA 2095
||||||||| |||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct 2463 AAGAAAGAGGCACAATTGCTATAATTGCGGACTAGTGTTTTGCCACTCGTGCACTAGTAA 2522
Query 2096 AAAGTCGTTGAAGGCTTGTATGGCACCGAACCCAAACAAACCATATCGAGTGTGTGACAA 2155
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 2523 AAAGTCATTGAAGGCTTGTATGGCACCGAACCCCAACAAACCATATCGAGTGTGTGATAA 2582
Query 2156 GTGTTTTAACAAATTGAAAAAGACGATGGAAACAGATCCATCGTCTCATTCTTCTCTGAG 2215
|||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||
Sbjct 2583 GTGTTTTAACAAATTGAAAAAGACCATGGAAACAGATCCATCATCCCATTCTTCTCTGAG 2642
Query 2216 TAGAAGAGGAAGCATTAACCAGGGATCAGATCCCATTGACAAAGATGACAAGTTCGATTC 2275
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2643 TAGAAGAGGAAGCATTAACCAGGGATCAGATCCCATTGACAAAGATGACAAGTTCGATTC 2702
Query 2276 TAGATCCGATGGACAGTTAGCTAGATTTTCATTGATGGAGTCCATGAGACAAGTGGACAG 2335
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 2703 TAGATCCGATGGACAGTTAGCTAGATTTTCATTAATGGAATCCATGAGACAAGTGGACAG 2762
Query 2336 TCGATATAAGAAGAACAAGAAATATGAATTCAATAGTAGCCGTGTCTCGCCTATACCTAG 2395
|||| |||||||||||||||| ||||||||||||||||| |||||||| || ||||| ||
Sbjct 2763 TCGACATAAGAAGAACAAGAAGTATGAATTCAATAGTAGTCGTGTCTCACCCATACCGAG 2822
Query 2396 TGGAAGCTCTCAACGGGGTGCGCTTAACATAGCCAAGTCTTTCAATCCAGTATTTGGAGC 2455
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2823 TGGAAGCTCTCAACGGGGTGCACTTAACATAGCCAAGTCTTTCAATCCAGTATTTGGAGC 2882
Query 2456 ATCAAAGAAGTTCTTCTCAGCTTCTGTTCCTGGTTCTCGAATTGTGTCTCGGGCAACTTC 2515
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2883 ATCAAAGAAGTTCTTCTCAGCTTCTGTTCCTGGTTCTCGAATTGTGTCTCGGGCAACTTC 2942
Query 2516 CCCAATATCGAGACGTCCTAGTCCACCCCGGTCAACTACACCAACTCCCACTCTTTCGGG 2575
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 2943 CCCAATATCGAGGCGTCCTAGTCCACCCCGGTCAACTACACCGACTCCCACTCTTTCAGG 3002
Query 2576 ACTAGCCACACCAAAATTTGTTGTGGATGATACTAAGAGAACCAATGATAACCTAAGCCA 2635
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 3003 ACTAGCCACACCAAAATTTGTAGTGGATGATACTAAGAGAACCAATGATAACCTAAGCCA 3062
Query 2636 AGAGGTTGTTAAGCTAAGATCTCAGGTTGAAAGTCTTACAAGGAAGGCCCAGCTTCAAGA 2695
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3063 AGAGGTCGTTAAGCTAAGATCTCAGGTTGAAAGTCTTACAAGGAAGGCCCAGCTTCAAGA 3122
Query 2696 AGTTGAGCTGGAAAGAACAGCCAAGCAGCTAAAAGAGGCGTTAGCAATCGCTAATGAAGA 2755
||||||||||||||||||| |||||||||||||||||||||| ||||| ||||||||||
Sbjct 3123 AGTTGAGCTGGAAAGAACAACCAAGCAGCTAAAAGAGGCGTTGGCAATAACTAATGAAGA 3182
Query 2756 AACGACGAGATGCAAGGCAGCAAAAGAAGTGATCAAATCACTTACCGCTCAATTAAAGGA 2815
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 3183 AACGACAAGATGCAAGGCAGCAAAAGAAGTGATCAAATCACTTACCGCTCAATTAAAAGA 3242
Query 2816 CATGGCCGAAAGATTACCCGTTGGATCAGCTCGGACTGTGAAGTCTCCTCCTTCTCTTAA 2875
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3243 CATGGCCGAAAGATTACCCGTTGGATCAGCTCGGACTGTGAAGTCTCCTCCTTCTCTTAA 3302
Query 2876 TTCATTTGGTTCCAGCCCTGGTCGCATTGACCCTTTTAATATCTTAAACCAACCAAATAG 2935
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 3303 CTCATTTGGTTCCAGCCCTGGTCGCATTGACCCTTTTAATATCTTAAACCAAGCAAATAG 3362
Query 2936 CCAAGAATCCGAGCCAAATGGCATTAATACGCCAATGTTTTCTAATGGGACCATGACACC 2995
|||||||||||||||||||||||| | || |||||||||||||||||||||||||||||
Sbjct 3363 CCAAGAATCCGAGCCAAATGGCATCACGACCCCAATGTTTTCTAATGGGACCATGACACC 3422
Query 2996 TGCATTTGGTAATGGTGAATCAACGAATGAAGCACATAACGAGAAGGAATGGGTTGAACA 3055
||||||||| ||||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct 3423 TGCATTTGGGAATGGTGAAGCAACGAATGAAGCACGGAACGAGAAGGAATGGGTTGAACA 3482
Query 3056 AGATGAACCTGGTGTCTATATCACTCTTACAGCCTTAGCCGGAGGTGCTAGAGATCTCAA 3115
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3483 AGATGAACCTGGTGTCTATATCACTCTTACAGCCTTAGCCGGAGGTGCTAGAGATCTCAA 3542
Query 3116 ACGCGTCCGTTTCAGCCGAAAAAGGTTTAGTGAGAAACAAGCAGAACAGTGGTGGGCAGA 3175
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 3543 ACGCGTCCGTTTCAGCCGAAAAAGGTTTAGTGAGATACAAGCAGAACAGTGGTGGGCAGA 3602
Query 3176 TAACAGAGGAAGAGTCTATGAACAATACAATGTTCGCATGGTTGACAAAGCCAGTGAGGA 3235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3603 TAACAGAGGAAGAGTCTATGAACAATACAATGTTCGCATGGTTGACAAAGCCAGTGAGGA 3662
Query 3236 CTTGCCTCATTGAAACTCTTTAACACCAACCAGTT 3270
|||||||| |||||||||||||||||||||||||
Sbjct 3663 CTTGCCTCGCTGAAACTCTTTAACACCAACCAGTT 3697
> AT5G19420.2 | Symbols: | Regulator of chromosome condensation
(RCC1) family with FYVE zinc finger domain | chr5:6547638-6553242
REVERSE LENGTH=3988
Length=3988
Score = 3415 bits (1849), Expect = 0.0
Identities = 2584/2939 (88%), Gaps = 50/2939 (2%)
Strand=Plus/Plus
Query 90 GCTATCATTGCCCTGAAAAAGGGTGCTTACTTGCTAAAGTATGGGAGAAGAGGGAAA-CC 148
||||||| ||| || ||||| || ||||| ||||| |||||||| ||||| |||||| ||
Sbjct 436 GCTATCACTGCTCTTAAAAAAGGAGCTTATTTGCTTAAGTATGGCAGAAG-GGGAAAGCC 494
Query 149 TAAGTTCTGCCCATTTCGCCTTTCTAATGATGAAACTGTTTTGATATGGTTCTCTGGAAA 208
||||||||| |||||||||||||| ||||||||| |||||||||||||||| ||||| ||
Sbjct 495 TAAGTTCTGTCCATTTCGCCTTTCGAATGATGAATCTGTTTTGATATGGTTTTCTGGGAA 554
Query 209 CGAGGAGAAACATCTGAAGCTGAGCCATGTTTCTAGGATCATATCTGGACAACGCACTCC 268
||||| |||||| ||||||| || |||||||| |||||||| ||||| || ||||||||
Sbjct 555 GGAGGAAAAACATTTGAAGCTAAGTCATGTTTCCAGGATCATCTCTGGGCAGCGCACTCC 614
Query 269 TATTTTTCAGAGGTATCCTCGTCCCGAGAAGGAATATCAGTCGTTTTCACTAATATATAG 328
|||||||||||| ||||| ||||| |||||||||||||| ||||| || ||||||||| |
Sbjct 615 TATTTTTCAGAGATATCCACGTCCTGAGAAGGAATATCAATCGTTCTCGCTAATATAT-G 673
Query 329 -TGAGAGGTCTTTGGATTTGATATGCAAGGATAAAGATGAGGCTGAGGTGTGGTTTACTG 387
|||||||| |||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 674 ACGAGAGGTCACTGGATTTGATATGCAAGGATAAAGATGAGGCTGAAGTGTGGTTTAGTG 733
Query 388 GTCTTAAGGCCTTGATTTCGCATTGCCATCAA-AGAAACAGGAGAACTGAATCAAGAAGT 446
|||| || |||||||| || | ||| |||||| |||| |||| || ||||| ||||||
Sbjct 734 GTCTAAAAGCCTTGATATCCCGTTGTCATCAACGGAAA-TGGAGGACCGAATCGAGAAGT 792
Query 447 GACGGTACACCATCTGAAGCTAATAGCCCAAGAACATATACCCGGAGAAGCTCTCCTTTA 506
|| || || ||||| ||||||||||| || ||||||||||||||||||||||| ||||||
Sbjct 793 GATGGAACGCCATCCGAAGCTAATAGTCCGAGAACATATACCCGGAGAAGCTCCCCTTTA 852
Query 507 CATTCTCCATTTAGTAGCAATGACAGTTTGCAGAAGGATGGTTCTAATCACCTTCGTATT 566
||||||||||||||||||||||| ||||| |||||||| || || |||||||||||| ||
Sbjct 853 CATTCTCCATTTAGTAGCAATGAAAGTTTCCAGAAGGAGGGCTCAAATCACCTTCGTCTT 912
Query 567 CATAGTCCATTTGAGAGCCCACCTAAGAATGGGC-TTGACAAGGCATTTTCGGACATGGC 625
|| ||||||| ||||||||| ||||||||| ||| |||||||||||||||| |||||| |
Sbjct 913 CACAGTCCATATGAGAGCCCGCCTAAGAAT-GGCGTTGACAAGGCATTTTCAGACATGTC 971
Query 626 ATTATATGCAGTTCCTCCAAAAGGATTTTACCCCTCAGATTCTGCAACTATTTCTGTTCA 685
|| |||||||||||||||||||| |||| |||| ||| ||| |||||||| || |||||
Sbjct 972 GTTGTATGCAGTTCCTCCAAAAGGTTTTTTCCCCCCAGGTTCGGCAACTATGTCAGTTCA 1031
Query 686 -------T--TCTGGAGGCTCGGATA-GCATGCATGGACATATGAGGGGTATGGGGATGG 735
| ||||||||||| |||| || | ||||| || |||| || ||||| ||||
Sbjct 1032 CTCTTTGTCATCTGGAGGCTCAGATACGC-TACATGGTCACATGAAAGGAATGGGTATGG 1090
Query 736 ATGCTTTTAGAGTTAGTATGTCAAGTGCTG-TTAGTTCCTCGAGCCACGGTTCTGGTCAT 794
||||||||||||||||| |||||||||| | ||||||| |||||||| ||||||||||||
Sbjct 1091 ATGCTTTTAGAGTTAGTCTGTCAAGTGC-GATTAGTTCGTCGAGCCATGGTTCTGGTCAT 1149
Query 795 GATGATGGAGATGCGTTAGGAGATGTTTTCATCTGGGGAGAAGGCATAGGAGAAGGTGTT 854
||||||||||| | || ||||| |||||||| ||||||||||| ||||| |||||||||
Sbjct 1150 GATGATGGAGACACATTGGGAGACGTTTTCATGTGGGGAGAAGGAATAGGCGAAGGTGTT 1209
Query 855 TTGGGTGGTGGAAACCGTAGAGTTGGAAGTTCGTTTGACATGAAAATGGATTCCTTATTG 914
|||||||||||||||| ||||||||||||||||| || || ||||||||||||||| ||
Sbjct 1210 TTGGGTGGTGGAAACCACAGAGTTGGAAGTTCGTTGGAGATCAAAATGGATTCCTTACTG 1269
Query 915 CCAAAAGCTTTAGAATCTGCAATAGTACTGGACGTCCAAAATATTGCTTGTGGTGGACAA 974
|||||||||||||| ||| | |||||||| || ||||| ||||||||||| |||||||||
Sbjct 1270 CCAAAAGCTTTAGAGTCTACTATAGTACTTGATGTCCAGAATATTGCTTGCGGTGGACAA 1329
Query 975 CACGCTGTCCTTGTGACAAAACAAGGAGAAAGTTTTTCTTGGGGAGAGGAATCTGAAGGC 1034
|| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1330 CATGCTGTCCTTGTAACAAAACAAGGAGAAAGTTTTTCTTGGGGAGAGGAATCTGAAGGT 1389
Query 1035 AGGCTTGGCCACGGTGTTGATTCCAATATTCAACAACCAAAGCTCATTGATGCACTCAAC 1094
||||||||||| ||||| ||||||||| ||||||| ||||||||||||||||| |||||
Sbjct 1390 AGGCTTGGCCATGGTGTGGATTCCAATGTTCAACATCCAAAGCTCATTGATGCCCTCAAT 1449
Query 1095 ACCACAAATATTGAGCTTGTAGCATGTGGTGAATTTCATAGTTGTGCGGTTACCCTATCA 1154
|||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||
Sbjct 1450 ACCACAAATATTGAGCTTGTAGCATGTGGTGAATACCATAGTTGTGCAGTTACTCTATCG 1509
Query 1155 GGGGATTTGTATACCTGGGGTAAAGGAGATTTTGGTGTTCTTGGACATGGAAATGAAGTC 1214
|||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct 1510 GGGGATTTGTATACCTGGGGTAAAGGAGATTTTGGTATTCTGGGACATGGAAATGAAGTC 1569
Query 1215 AGTCACTGGGTCCCTAAGAGGGTTAATTTTCTGCTGGAAGGGATACATGTATCATCCATT 1274
|||||||||||||| || || || ||||||||| |||||||||||||||||||||||||
Sbjct 1570 AGTCACTGGGTCCCCAAAAGAGTAAATTTTCTGATGGAAGGGATACATGTATCATCCATC 1629
Query 1275 GCTTGTGGACCTTACCACACAGCAGTCGTTACATCTGCTGGGCAGTTGTTTACTTTTGGG 1334
|||||||| |||||||||||||| || || || || |||||||||||||||||||||||
Sbjct 1630 GCTTGTGGGCCTTACCACACAGCTGTTGTGACTTCCGCTGGGCAGTTGTTTACTTTTGGT 1689
Query 1335 GATGGGACCTTTGGTGTTTTGGGCCATGGAGACAAGAAAAGTGTTTTCATACCTCGGGAG 1394
|||||||||||||||||||||||||||||||||| ||||||||||||||||||| | |||
Sbjct 1690 GATGGGACCTTTGGTGTTTTGGGCCATGGAGACAGGAAAAGTGTTTTCATACCTAGAGAG 1749
Query 1395 GTAGACTCTTTGAAAGGTCTTCGCACTGTCCGGGCAGCTTGTGGTGTATGGCACACAGCA 1454
|||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 1750 GTAGACTCCTTGAAAGGTCTTCGCACTGTTCGGGCAGCCTGTGGTGTATGGCACACAGCC 1809
Query 1455 GCAGTTGTGGAAGTCATGGTTGGGAGCTCAAGCTCAAGTAATTGCTCTTCTGGAAAGCTC 1514
|||||||| |||||||||||||||||||| ||||| ||||| |||||||| |||||||||
Sbjct 1810 GCAGTTGTAGAAGTCATGGTTGGGAGCTCGAGCTCTAGTAACTGCTCTTCAGGAAAGCTC 1869
Query 1515 TTTACATGGGGGGATGGTGATAAGGGTCGTCTTGGTCATGGTAATAAAGAACCAAAACTT 1574
||||||||||| |||||||| ||| ||||||||||||||||| | |||||||||||||||
Sbjct 1870 TTTACATGGGGTGATGGTGACAAGAGTCGTCTTGGTCATGGTGACAAAGAACCAAAACTT 1929
Query 1575 GTGCCTACCTGTGTTGCTGCTCTTGTTGAACCCAATTTTTGCCAAGTTGCATGTGGGCAC 1634
||||||||||||||||| |||||||| ||||| |||||||| |||||||| ||||| ||
Sbjct 1930 GTGCCTACCTGTGTTGCAGCTCTTGTAGAACCTAATTTTTGTCAAGTTGCGTGTGGACAT 1989
Query 1635 AGTCTAACGGTTGCACTTACAACATCAGGCCATGTCTATACTATGGGCAGTCCTGTATAT 1694
|| ||||| ||||||||||||||||| ||||| ||||||||||||||||||||||| |||
Sbjct 1990 AGCCTAACAGTTGCACTTACAACATCGGGCCACGTCTATACTATGGGCAGTCCTGTTTAT 2049
Query 1695 GGTCAGCTTGGAAACTCACATGCAGATGGAAAACTTCCAAACCGTGTCGAAGGTAAACTT 1754
||||||||||||||| |||||||||||||||| |||||| ||||||||| || ||||||
Sbjct 2050 GGTCAGCTTGGAAACCCACATGCAGATGGAAAGGTTCCAACCCGTGTCGACGGCAAACTT 2109
Query 1755 CACAAGAGTTTTGTCGAAGAGATAGCCTGCGGTGCTTATCATGTTGCAGTTTTAACTTCG 1814
||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 2110 CACAAGAGTTTTGTCGAAGAGATTGCTTGCGGTGCTTATCATGTTGCAGTTTTAACTTCA 2169
Query 1815 AGGACTGAGGTTTACACTTGGGGAAAGGGATCAAATGGTAGACTTGGTCATGGAGATGTA 1874
|||||||||||||||||||||||||| ||||||||||||||||| || ||||| |||| |
Sbjct 2170 AGGACTGAGGTTTACACTTGGGGAAAAGGATCAAATGGTAGACTAGGCCATGGGGATGCA 2229
Query 1875 GATGATAGAAATTCCCCGACATTGGTTGAGTCGCTTAAGGATAAACAGGTTAAAAGTATT 1934
|||||| |||||||||| ||||||||||||||||| |||||||||||||| |||||||||
Sbjct 2230 GATGATCGAAATTCCCCCACATTGGTTGAGTCGCTGAAGGATAAACAGGTGAAAAGTATT 2289
Query 1935 GCCTGTGGCACTAACTTCACAGCAGCTGTCTG-CATTCAC-AGATGGGCATCAGGGATGG 1992
|| ||||| |||||||||| ||||||||||| | ||||| || ||||||||||||||||
Sbjct 2290 GCATGTGGTTCTAACTTCACCGCAGCTGTCTGTC-TTCACAAG-TGGGCATCAGGGATGG 2347
Query 1993 ACCAGTCCATGTGTTCAGGTTGCCGTCAGCCCTTCAGTTTTAAAAGAAAGAGACACAATT 2052
||||||||||||||||||||||||||||||| |||| ||| || |||||| | |||||||
Sbjct 2348 ACCAGTCCATGTGTTCAGGTTGCCGTCAGCCTTTCAATTTCAAGAGAAAGCGGCACAATT 2407
Query 2053 GCTATAATTGCGGACTAGTGTTTTGCCACTCATGCTCTAGTAAAAAGTCGTTGAAGGCTT 2112
||||||| || ||||| ||||||||||| || ||| || ||||||||| |||||||||
Sbjct 2408 GCTATAACTGTGGACTTGTGTTTTGCCATTCTTGCAGTAATAAAAAGTCCCTGAAGGCTT 2467
Query 2113 GTATGGCACCGAACCCAAACAAACCATATCGAGTGTGTGACAAGTGTTTTAACAAATTGA 2172
|||||||||| ||||| ||||||||||||||||||||||| | |||||| ||||||||||
Sbjct 2468 GTATGGCACCAAACCCTAACAAACCATATCGAGTGTGTGATAGGTGTTTCAACAAATTGA 2527
Query 2173 AAAAGACGATGGAAACAGATCCATCGTCTCATTCTTCTCTGAGTAGAAGAGGAAGCATTA 2232
||||| | |||||||| |||||||| |||||||||||| ||||| |||||| ||| | |
Sbjct 2528 AAAAGGCCATGGAAACGGATCCATCATCTCATTCTTCTTTGAGTCGAAGAGAAAGTGTCA 2587
Query 2233 ACCAGGGATCAGATCCCATTGACAAAGATGACAAGTTCGATTCTAGATCCGATGGACAGT 2292
|||| ||||||||| | ||||||| |||||| ||||| ||| |||||||||| ||||||
Sbjct 2588 ACCAAGGATCAGATGCAATTGACAGAGATGAGAAGTTGGATACTAGATCCGACGGACAGC 2647
Query 2293 TAGCTAGATTTTCATTGATGGAGTCCATGAGACAAGTGGACAGTCGATATAAGAAGAACA 2352
|||||||||| |||||| ||||| ||||||| |||||||||||||||| ||||| || |
Sbjct 2648 TAGCTAGATTCTCATTGTTGGAGCCCATGAGGCAAGTGGACAGTCGATCCAAGAAAAATA 2707
Query 2353 AGAAATATGAATTCAATAGTAGCCGTGTCTCGCCTATACCTAGTGGAAGCTCTCAACGGG 2412
|||||||||||||||||||||| |||||||| || ||||| ||||| |||| || ||||
Sbjct 2708 AGAAATATGAATTCAATAGTAGTCGTGTCTCACCAATACCGAGTGGGGGCTCGCACCGGG 2767
Query 2413 GTGCGCTTAACATAGCCAAGTCTTTCAATCC-AGTATTTGGAGCATCAAAGAAGTTCTTC 2471
|| | || |||||| |||||||||| ||||| | | || ||| |||||||||| ||||||
Sbjct 2768 GTTCACTAAACATAACCAAGTCTTTTAATCCAACT-TTCGGATCATCAAAGAAATTCTTC 2826
Query 2472 TCAGCTTCTGTTCCTGGTTCTCGAATTGTGTCTCGGGCAACTTCCCCAATATCGAGACGT 2531
|||||||| ||||||||||| ||||||| ||| ||||||||||| |||||||| ||||||
Sbjct 2827 TCAGCTTCAGTTCCTGGTTCCCGAATTGCGTCCCGGGCAACTTCACCAATATCAAGACGT 2886
Query 2532 CCTAGTCCACCCCGGTCAACTACACCAACTCCCACTCTTTCGGGACTAGCCACACCAAAA 2591
||||| ||||| |||||||| || ||||||||||||||||| |||||| | |||||||||
Sbjct 2887 CCTAGCCCACCTCGGTCAACAACGCCAACTCCCACTCTTTCAGGACTAACTACACCAAAA 2946
Query 2592 TTTGTTGTGGATGATACTAAGAGAACCAATGATAACCTAAGCCAAGAGGTTGTTAAGCTA 2651
|||| ||||||||||| ||||||| |||||||||||||||||||||||| |||| ||||
Sbjct 2947 ATTGTCGTGGATGATACCAAGAGAAGCAATGATAACCTAAGCCAAGAGGTGGTTATGCTA 3006
Query 2652 AGATCTCAGGTTGAAAGTCTTACAAGGAAGGCCCAGCTTCAAGAAGTTGAGCTGGAAAGA 2711
|||||||| ||||||| ||||||| ||||||| || |||||||||||||| |||||||||
Sbjct 3007 AGATCTCAAGTTGAAAATCTTACACGGAAGGCACAACTTCAAGAAGTTGAACTGGAAAGA 3066
Query 2712 ACAGCCAAGCAGCTAAAAGAGGCGTTAGCAATCGCTAATGAAGAAACGA-CGAGATGCAA 2770
||| |||| |||||||| ||||| ||||||| |||| ||||||| | | ||||||||||
Sbjct 3067 ACAACCAAACAGCTAAAGGAGGCACTAGCAATTGCTAGTGAAGAATC-AGCGAGATGCAA 3125
Query 2771 GGCAGCAAAAGAAGTGATCAAATCACTTACCGCTCAATT-AAAGGACATGGCCGAAAGAT 2829
||||||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||
Sbjct 3126 GGCAGCAAAAGAAGTGATCAAATCACTTACCGCTCAATTGAAAG-ACATGGCTGAAAGAC 3184
Query 2830 TACCCGTTGGATCAGCTCGGACTGTGAAGTCTCC-TCCTTCTCTTAATTCATTTGGTTCC 2888
|||| |||||||||||||||||||| |||||||| || | ||| |||||||||||||||
Sbjct 3185 TACCTGTTGGATCAGCTCGGACTGTCAAGTCTCCGTC-T-CTC--AATTCATTTGGTTCC 3240
Query 2889 AGCCCTGGT--CGCATTGACCCTT-TT--AATATCTTAAACCAACCAAATAGCCAAGAAT 2943
|| |||| | ||| | | ||||| || || | |||||||| ||||| || | ||||
Sbjct 3241 AGTCCTGATTACGC-T-GCCCCTTCTTCTAACACCTTAAACCGTCCAAACAGTCGAGAAA 3298
Query 2944 CCGAGCCAAATGGCATTAAT-AC-G-CC-AATGTTTTCTAATGGGACCATG-ACACCTG 2997
| || | || || | || || | || ||||||||| |||||||||| | |||||||
Sbjct 3299 CTGATTCTGATAGCCT-AACCACCGTCCCAATGTTTTCAAATGGGACCA-GCACACCTG 3355
Score = 244 bits (132), Expect = 3e-63
Identities = 180/203 (89%), Gaps = 3/203 (1%)
Strand=Plus/Plus
Query 3032 TAACGAGAAGGAATGGGTTGAACAAGATGAACCTGGTGTCTATATCACTCTTACAGCCTT 3091
|||||| || ||||||||||||||||||||||||||||| || |||||||| ||||||||
Sbjct 3447 TAACGAAAATGAATGGGTTGAACAAGATGAACCTGGTGTGTACATCACTCTCACAGCCTT 3506
Query 3092 AGCCGGAGGTGCTAGAGATCTCAAACGCGTCCGTTTCAGCCGAAAAAGGTTTAGTGAGAA 3151
||| |||||||| || ||||||||||| |||||||||||||| || |||||||||||||
Sbjct 3507 AGCTGGAGGTGCAAGGGATCTCAAACGTGTCCGTTTCAGCCGGAAGCGGTTTAGTGAGAA 3566
Query 3152 ACAAGCAGAACAGTGGTGGGCAGATAACAGAGGAAGAGTCTATGAACAATACAATGTTCG 3211
|||||||||| | ||||||||||| |||||||||||||| || |||||||||||||| ||
Sbjct 3567 ACAAGCAGAAGAATGGTGGGCAGAGAACAGAGGAAGAGTTTACGAACAATACAATGTACG 3626
Query 3212 CAT-G--GTTGACAAAGCCAGTG 3231
||| | ||||| ||| ||||||
Sbjct 3627 CATAGTAGTTGATAAATCCAGTG 3649
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 162741563092
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5