BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg940741
Length=1205
Score E
Sequences producing significant alignments: (Bits) Value
AT5G12470.1 | Symbols: | Protein of unknown function (DUF3411)... 1906 0.0
> AT5G12470.1 | Symbols: | Protein of unknown function (DUF3411)
| chr5:4044622-4047436 REVERSE LENGTH=1635
Length=1635
Score = 1906 bits (1032), Expect = 0.0
Identities = 1148/1203 (95%), Gaps = 11/1203 (1%)
Strand=Plus/Plus
Query 12 TCTGTAGCATCAATGGCAATCGCTTCATGCTTCTTCTGTGTTCCAACACCCAACACATCT 71
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| ||
Sbjct 135 TCTGTAGCATCAATGGCAATCGCTTCCTGCTTCTTCTGTGTTCCAACACCGAACACAGCT 194
Query 72 ATCTCTGAATCCAATCTCACATGGCCTCACCTTGCTTCGTTTCCTAGACTCTCTTCCTCT 131
||||||||||||||||| |||||||||||| | ||||||||||||||||||||||| |||
Sbjct 195 ATCTCTGAATCCAATCTGACATGGCCTCACATCGCTTCGTTTCCTAGACTCTCTTCATCT 254
Query 132 TCCTCTTTTAACGGTGTAATCTCTGCAAAGTCCATCTCTTTCAACCGCCGCGTTCCTATT 191
|||||||||||||||||||||||||||||||| |||||||| |||||||| || ||||||
Sbjct 255 TCCTCTTTTAACGGTGTAATCTCTGCAAAGTCAATCTCTTTTAACCGCCGTGTACCTATT 314
Query 192 ACCCCTGTTTTATCCGCTTCGATTGATAACGGCGGCTCTGATAACAACGGAGGAGGTC-T 250
|||||||||||||||||||| | || |||||||||||||||||||||||||||||||| |
Sbjct 315 ACCCCTGTTTTATCCGCTTCAAGTGGTAACGGCGGCTCTGATAACAACGGAGGAGGTCTT 374
Query 251 --TGGTGGTGGTGGCGATGGCGATGGAGGCAAAAATGATGGAGATGGGCACGGTGACGAG 308
|||||||||||| | |||||||||||| || |||||||||||||| ||||||||||||
Sbjct 375 AGTGGTGGTGGTGGTGGTGGCGATGGAGGTAAGAATGATGGAGATGGACACGGTGACGAG 434
Query 309 GACAGGGATAGGAACAGGAACGAGGCGATGCTTTTGTTGAAGGAGTCTGGGACTGGATTG 368
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 435 GACAGGGATAGGAACAGGAACGAGGCGATGCTTTTGTTGAAGGAGTCTGGGATTGAATTG 494
Query 369 GAGAGTCTTCCCAAGGATCTAGCGGCTGCTATTGAGTCGGGTCGGATTCCTGGATCGGTT 428
|||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 495 GAGAGTCTTCCCAAAGATCTAGCGGCTGCTATTGAGGCGGGTCGGATTCCTGGATCGGTT 554
Query 429 ATCACTCGGTTCCTGGAGCTTCAGAAATCGGCTGTGATGCGGTGGCTGATGCAGTTTGGT 488
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 555 ATCACTCGGTTCCTGGAGCTTCAGAAATCGGCTGTGATGCGGTGGCTGATGCAGTTTGGT 614
Query 489 GGGTTTAGAGAAAGATTGTTGGCTGATGATCTCTTCATGGCTAAACTTGCCATGGAATGT 548
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 615 GGGTTTAGGGAAAGATTGTTGGCTGATGATCTCTTCATGGCTAAACTCGCCATGGAATGT 674
Query 549 GGTGTCGGAATCTTCACCAAGACTGCTGCTGAGTATGAACGGCGTAGAGAAAACTTCTTC 608
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 675 GGTGTTGGAATCTTCACCAAGACTGCTGCTGAGTATGAACGGCGTAGAGAAAACTTCTTC 734
Query 609 AATGAACTTGAAGTCGTCTTTGCCGATGTGGCGATGGCTATTATTGCTGATTTCATGTTA 668
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 735 AATGAACTTGAAGTTGTCTTTGCCGATGTGGCGATGGCTATTATTGCTGATTTCATGTTG 794
Query 669 GTTTATCTTCCTGCTCCTACCGTATCTCTTCGACCACCTCTTGCACTTACTGCTGGAGGT 728
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 795 GTTTATCTTCCTGCTCCTACCGTTTCTCTTCGACCACCTCTCGCACTTACTGCTGGAGGT 854
Query 729 ATATCCAAGTTTTTCCACAACTGCCCAGACAATGCCTTCCAGGTTGCTCTCTCCGGAACC 788
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 855 ATATCCAAGTTTTTCCACAACTGCCCAGACAATGCCTTCCAGGTTGCTCTCTCCGGAACC 914
Query 789 TCATATACTCTCTTGCAAAGGCTAGGTGCTATAACGCGCAATGGAGCTAAGCTGTTTGCC 848
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 915 TCATATACTCTCTTGCAAAGGCTAGGTGCTATAACGCGCAATGGAGCTAAGCTGTTTGCC 974
Query 849 GTTGGCACCACATCATCGCTGGTTGGTACTGCTATTACAAATGCATTCATAAAAGCACGA 908
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 975 GTTGGCACCACATCATCGCTGGTTGGTACTGCTATTACAAATGCATTCATAAAAGCACGA 1034
Query 909 CGAGCTGTAGACCAGACTTCTGAAAGTGAAGTTGAAACTGTTCCGATCGTCTCCACAAGT 968
|||||| ||||||| ||||||| ||||||| |||||||||||||| ||||||||||||
Sbjct 1035 AAAGCTGTGGACCAGAATTCTGAAGGTGAAGTCGAAACTGTTCCGATAGTCTCCACAAGT 1094
Query 969 GTTGCATATGGTGTCTATATGGCAGTTTCTAGCAACCTAAGGTACCAAATAGTGGCAGGT 1028
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 1095 GTTGCATATGGTGTCTACATGGCAGTTTCTAGCAACCTAAGGTACCAAATAGTGGCTGGT 1154
Query 1029 GTAATTGAACAACGTCTCCTGGAGCCAATGCTACACCAACACAAACTTGCACTGAGTGCG 1088
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1155 GTGATTGAACAACGTCTCCTGGAGCCAATGCTACACCAACACAAACTTGCACTCAGTGCG 1214
Query 1089 TTGTG-TTTCGCAGTTAGAACAGGCAACACATTCTTGGGTTCCTTATTATGGGTGGATTA 1147
||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1215 TTGTGCTTT-GCAGTTAGAACAGGCAACACATTCTTGGGTTCCTTATTATGGGTGGATTA 1273
Query 1148 TGCCCGCCTCATCGGTATCCAGAAATCTCATTGAAGAAGC--A----GAACCGGATGTGC 1201
|||||||||||| ||||||||||||||||| ||| ||||| | |||||||||||||
Sbjct 1274 TGCCCGCCTCATTGGTATCCAGAAATCTCACTGATGAAGCGGAATAAGAACCGGATGTGC 1333
Query 1202 CCG 1204
|||
Sbjct 1334 CCG 1336
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59186442555
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5