BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg940745
Length=1816
Score E
Sequences producing significant alignments: (Bits) Value
AT5G12860.1 | Symbols: DiT1 | dicarboxylate transporter 1 | chr... 2867 0.0
> AT5G12860.1 | Symbols: DiT1 | dicarboxylate transporter 1 | chr5:4059686-4061950
REVERSE LENGTH=1946
Length=1946
Score = 2867 bits (1552), Expect = 0.0
Identities = 1746/1836 (95%), Gaps = 27/1836 (1%)
Strand=Plus/Plus
Query 1 TCGCCGACGACGCTACAACAATGGCGtctctcgctctctccggctcctgctctctcgctt 60
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 12 TCGCCGACGACGCTACAACCATGGCGTCTCTCGCTCTCTCCGGCTCCTGCTCTCTCGCTT 71
Query 61 tccctctcaaatctcgatctctctctctccctcgtcctccttcttcctctctcaatttga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 72 TCCCTCTCAAATCTCGATCTCTCTCTCTCCCTCGTCCTCCTTCTTCCTCTCTCAATTTGA 131
Query 121 cgaaacctctccgatctctcgactctcGCTTCTCCTTACTCAAATCTCCACTTCCCGCCG 180
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 132 CGAAACCTCTCCGATCTCTCGATTCTCGCTTCTCCTTACTCAAATCTCCACTTCCCG--T 189
Query 181 CTTCTCTTA-ACCGGAGATCATCAACTCTCGTTAAAGCCTCTT---CCGCCGC-T--GCT 233
| ||| ||| |||||||||||||||||||||||||||||||| ||| ||| | |||
Sbjct 190 C-TCT-TTACGCCGGAGATCATCAACTCTCGTTAAAGCCTCTTCCACCGTCGCTTCAGCT 247
Query 234 T-CTCCGTCT-C--CT-C-CCGTT-GCTCCAGCTCCCGTTCCATGGCAAGGAGCTGCCAT 286
| || | ||| | || | || || | ||||||||| |||||||||||||||||||||||
Sbjct 248 TCCT-CTTCTCCAACTCCTCCTTTGGTTCCAGCTCCGGTTCCATGGCAAGGAGCTGCCAT 306
Query 287 TAAGCCTCTTATCGCATCGATCGCTACTGGTTTGATTCTATGGTTCGTTCCTGTCCCCGA 346
|||||||||| |||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 307 TAAGCCTCTTCTCGCTTCGATCGCTACTGGTTTGATTCTATGGTTCGTTCCAGTCCCCGA 366
Query 347 AGGTGTCACTCGCAACGCGTGGCAATTACTCGCGATCTTCCTCGCCACCATCGTCGGGAT 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 367 AGGTGTCACTCGCAACGCGTGGCAATTACTCGCGATCTTCCTCGCCACCATCGTCGGGAT 426
Query 407 CATCACTCAGCCGCTTCCTCTCGGCGCTGTTGCTCTATTGGGATTAGGAGCTTCCGTTCT 466
|||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct 427 CATCACTCAGCCGCTTCCTCTCGGTGCTGTTGCTCTAATGGGATTAGGAGCTTCCGTTCT 486
Query 467 CACCAAAACCCTAACGTTCACCGCCGCGTTCTCCGCTTTCGGAGATCCAATCCCGTGGCT 526
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 487 CACCAAAACCCTAACGTTCGCCGCCGCGTTCTCCGCTTTCGGAGATCCAATCCCGTGGCT 546
Query 527 CATCGCTCTCGCCTTCTTCTTCGCTCGTGGTTTCATCAAAACCGGTCTCGGTAACCGTGT 586
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 547 CATCGCTCTTGCCTTCTTCTTCGCTCGCGGTTTCATCAAAACCGGTCTCGGTAACCGTGT 606
Query 587 AGCTTACCAGTTCGTTAGACTCTTTGGTAGCTCCTCGCTTGGGCTTGGTTACAGTCTCGT 646
|||||||||||||||||||||||| ||||||||||| ||||| || ||||||||||||||
Sbjct 607 AGCTTACCAGTTCGTTAGACTCTTCGGTAGCTCCTCCCTTGGTCTCGGTTACAGTCTCGT 666
Query 647 CTTCAGTGAAGCACTCTTAGCTCCGGCGATTCCTTCAGTCTCGGCTCGTGCCGGTGGAAT 706
|||||||||||| || |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 667 CTTCAGTGAAGCTCTTTTAGCTCCGGCGATTCCTTCTGTCTCGGCTCGTGCCGGTGGAAT 726
Query 707 CTTTCTCCCGTTGGTTAAATCTCTCTGTGTCGCTTGTGGTAGCAACGTTGGGGATGGAAC 766
||||||||||||||| |||||||||||||| |||||||| || |||||||||||||||||
Sbjct 727 CTTTCTCCCGTTGGTGAAATCTCTCTGTGTTGCTTGTGGGAGTAACGTTGGGGATGGAAC 786
Query 767 TGAGCACCGTCTTGGCTCGTGGTTGATGCTCACTTGTTTCCAGACTTCTGTGATCTCTTC 826
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 787 AGAGCACCGTCTTGGCTCGTGGTTGATGCTTACTTGTTTCCAGACTTCTGTGATCTCTTC 846
Query 827 TTCTATGTTCTTGACGGCTATGGCTGCCAATCCTTTGAGTGCTAATCTGGCGTTTAACAC 886
||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct 847 TTCTATGTTCTTGACGGCTATGGCTGCGAATCCTTTGAGTGCTAATTTGGCGTTTAACAC 906
Query 887 GATCAAGCAGACGATTGGATGGACTGATTGGGCAAAAGCTGCGATTGTACCAGGACTTGT 946
||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 907 GATTAAGCAGACGATTGGATGGACTGATTGGGCTAAAGCTGCGATTGTACCAGGACTTGT 966
Query 947 GTCTTTGATTGTTGTTCCGTTTCTTTTGTATCTTATCTATCCTCCTACGGTGAAGAGCAG 1006
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 967 GTCTTTGATTGTTGTTCCGTTTCTTTTGTATCTCATCTATCCTCCTACGGTGAAGAGCAG 1026
Query 1007 CCCTGATGCTCCCAAGCTGGCTCAGGAAAAGCTTGACAAGATGGGACCTATGTCTAAGAA 1066
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1027 TCCTGATGCTCCTAAGCTGGCTCAGGAAAAGCTTGACAAGATGGGACCTATGTCTAAGAA 1086
Query 1067 CGAGTTGATTATGGCCGCTACTTTGTTCCTCACGGTTGGTCTCTGGATTTTTGGAGCTAA 1126
||| ||||||||||| || ||||| ||||||||||||||||||||||| |||||||||||
Sbjct 1087 CGAATTGATTATGGCTGCCACTTTATTCCTCACGGTTGGTCTCTGGATCTTTGGAGCTAA 1146
Query 1127 GTTGAGTGTAGATGCTGTGACAGCAGCCATTCTTGGATTATCAGTCCTCCTTGTGACAGG 1186
|||| |||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 1147 GTTGGGTGTAGATGCTGTGACTGCAGCCATTCTTGGATTATCAGTCCTTCTTGTGACAGG 1206
Query 1187 TGTTGTGACATGGAAAGAGTGCTTAGCTGAGTCAGTCGCATGGGACACACTCACCTGGTT 1246
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1207 TGTTGTGACATGGAAAGAGTGCTTAGCTGAGTCGGTCGCATGGGACACACTCACCTGGTT 1266
Query 1247 TGCTGCTCTCATTGCGATGGCTGGTTATCTTAACAAATATGGTCTCATTGAGTGGTTCAG 1306
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1267 CGCTGCTCTCATTGCGATGGCTGGTTATCTTAACAAATATGGTCTCATTGAGTGGTTCAG 1326
Query 1307 CCAGACCGTAGTCAAGTTTGTGGGAGGATTGGGTTTGTCATGGCAGCTATCATTTGGAAT 1366
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1327 CCAGACCGTAGTCAAGTTTGTGGGAGGATTGGGTTTGTCATGGCAGCTATCTTTTGGAAT 1386
Query 1367 CCTCGTCCTCTTGTATTTCTACACTCACTACTTCTTTGCCAGTGGAGCTGCTCACATTGG 1426
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 1387 CCTCGTCCTCTTGTATTTCTACACTCACTACTTCTTTGCTAGTGGAGCTGCCCACATTGG 1446
Query 1427 AGCTATGTTCACTGCCTTTTTATCGGTCTCAACCGCTCTAGGCACTCCACCTTACTTTGC 1486
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1447 TGCTATGTTCACTGCCTTTTTATCGGTTTCAACCGCTCTAGGCACTCCACCTTACTTTGC 1506
Query 1487 AGCCTTGGTTCTTGCATTC-TTATCCAACCTGATGGGAGGATTGACTCATTATGGTATCG 1545
||||||||||||||| ||| || ||||||||||||||||||||||| |||||||||||||
Sbjct 1507 AGCCTTGGTTCTTGCGTTCCTT-TCCAACCTGATGGGAGGATTGACCCATTATGGTATCG 1565
Query 1546 GGTCTGCGCCTATCTTCTACGGGGCTAACTATGTGCCGTTGGCTAAATGGTGGGGCTATG 1605
|||||||||||||||||||||| |||||||| |||||| |||||||||||||||||||||
Sbjct 1566 GGTCTGCGCCTATCTTCTACGGAGCTAACTACGTGCCGCTGGCTAAATGGTGGGGCTATG 1625
Query 1606 GATTCCTGATTTCAATAGTCAACATTCTTATCTGGCTTGGTGTAGGTGGTGCCTGGTGGA 1665
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1626 GATTCCTGATTTCAATAGTCAACATTCTCATCTGGCTTGGTGTAGGTGGTGCCTGGTGGA 1685
Query 1666 AGTTCATTGGCTTGTGGTGAGGACCACAACACACCAGTATTCCCATTCTTTTCCTTA-T- 1723
||||||||||||||||||||||||||| | |||||| | |||||||||||||||||| |
Sbjct 1686 AGTTCATTGGCTTGTGGTGAGGACCACCATACACCAATCTTCCCATTCTTTTCCTTACTT 1745
Query 1724 ATATATA-A-TCTCTTAGAACGGCTTTGAGATTCAGATTTGAGAAGGATT-AAACTCAGG 1780
||||||| | |||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 1746 ATATATATAATCTCTTAGAACGGCTTTGAGATTCAGATTTGAGAAGGATTGAAA-TCAGG 1804
Query 1781 GTTTTAAGGATTGAGCAGAGTTTTTCTGCAATTTTT 1816
||| ||||||||||||||||||||||||||||||||
Sbjct 1805 GTTATAAGGATTGAGCAGAGTTTTTCTGCAATTTTT 1840
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89858975550
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5