BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg940747
Length=883
Score E
Sequences producing significant alignments: (Bits) Value
AT5G12870.1 | Symbols: ATMYB46, MYB46 | myb domain protein 46 |... 1399 0.0
> AT5G12870.1 | Symbols: ATMYB46, MYB46 | myb domain protein 46
| chr5:4062724-4064992 REVERSE LENGTH=1111
Length=1111
Score = 1399 bits (757), Expect = 0.0
Identities = 843/885 (95%), Gaps = 4/885 (0%)
Strand=Plus/Plus
Query 1 CAATTAACTCAACTaaaaaaaTGAGGAAACCAGAGGTAGCCATTGCAGCTAGTACTCATC 60
||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||| |
Sbjct 34 CAATTAACTCAACCAAAAATATGAGGAAGCCAGAGGTAGCCATTGCAGCTAGTACTCACC 93
Query 61 AAGTAAAGAAGATGAAGAAGGGTCTTTGGTCTCCGGAGGAAGACTCAAAGCTTATGCAAT 120
|||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||
Sbjct 94 AAGTAAAGAAGATGAAGAAGGGACTTTGGTCTCCTGAGGAAGACTCAAAGCTGATGCAAT 153
Query 121 ACATGTTAAGCAATGGACAAGGATGTTGGAGCGATGTTGCGAAAAACGCAGGTCTTCAAA 180
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 154 ACATGTTAAGCAATGGACAAGGATGTTGGAGTGATGTTGCGAAAAACGCAGGACTTCAAA 213
Query 181 GATGTGGCAAAAGCTGCCGTCTTCGTTGGATCAACTATCTTCGTCCTGACCTCAAGCGTG 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 214 GATGTGGCAAAAGCTGCCGTCTTCGTTGGATCAACTATCTTCGTCCTGACCTCAAGCGTG 273
Query 241 GTGCTTTCTCTCCTCAAGAAGAGGATCTCATCATTCGCTTTCATTCCATCCTCGGCAACA 300
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 274 GCGCTTTCTCTCCTCAAGAAGAGGATCTCATCATTCGCTTTCATTCCATCCTCGGCAACA 333
Query 301 GGTGGTCTCAGATTGCAGCACGATTGCCTGGTCGGACCGACAACGAGATCAAGAATTTTT 360
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 334 GGTGGTCTCAGATTGCAGCACGATTGCCTGGTCGGACCGATAACGAGATCAAGAATTTCT 393
Query 361 GGAACTCAACAATAAAGAAAAGGCTAAAGAAGATGTCTGATACATCCAATCTCA-TCAAC 419
||||||||||||||||||||||||||||||||||||| ||||| ||||| || | |||||
Sbjct 394 GGAACTCAACAATAAAGAAAAGGCTAAAGAAGATGTCCGATACCTCCAA-CTTAATCAAC 452
Query 420 AACTCATCCTCATCACCCAACACAACAAGTGACACCTCTTCTAATTCCGCCTCTTCTTTG 479
|||||||||||||||||||||||| |||| || |||||||||||||||| |||||||||
Sbjct 453 AACTCATCCTCATCACCCAACACAGCAAGCGATTCCTCTTCTAATTCCGCATCTTCTTTG 512
Query 480 GATCTTAAAGACATTATAGGAAGCTTCATGTCCTTACAAGAACAAGGCTTCGTCAACCCT 539
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 513 GATATTAAAGACATTATAGGAAGCTTCATGTCCTTACAAGAACAAGGCTTCGTCAACCCT 572
Query 540 TCCTTGACCCACATACCAAGCAACAATCCATTTCCAGCGGCAAACATGACCAGCCACCCG 599
|||||||||||||||| || |||||||||||||||| ||| |||||||| ||||||||||
Sbjct 573 TCCTTGACCCACATACAAACCAACAATCCATTTCCAACGGGAAACATGATCAGCCACCCG 632
Query 600 TGCAATGACGATTTCACACCTTATGTAGATGGTATCTATGGAGTAAACGCAGGGGTACAA 659
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 633 TGCAATGACGATTTTACCCCTTATGTAGATGGTATCTATGGAGTAAACGCAGGGGTACAA 692
Query 660 GGGGACCTCTATTTTCCACCTTTGGAATGTGAAGAAGGTGATTGGTACAATGCAAATATT 719
||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 693 GGGGAACTCTACTTCCCACCTTTGGAATGTGAAGAAGGTGATTGGTACAATGCAAATATA 752
Query 720 AACAACCACTTAGACGAGTTGAACACTAATGGATCTGGAAACGCAACTGACAGTATGAGA 779
||||||||||||||||||||||||||||||||||| ||||||||| |||| ||||||||
Sbjct 753 AACAACCACTTAGACGAGTTGAACACTAATGGATCCGGAAACGCACCTGAGGGTATGAGA 812
Query 780 CCAGGGGAAGAATTTTGGGACCTTGACCAGTTGATGAACACTGAGGTTCCTTCGTTTTAC 839
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 813 CCAGTGGAAGAATTTTGGGACCTTGACCAGTTGATGAACACTGAGGTTCCTTCGTTTTAC 872
Query 840 TTCAACTTCAAACAAAGCATATGAAT-TTTT-ACATCATCTTATT 882
|||||||||||||||||||||||||| |||| || ||||||||||
Sbjct 873 TTCAACTTCAAACAAAGCATATGAATATTTTTACGTCATCTTATT 917
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43100898126
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5