BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg940749
Length=1512
Score E
Sequences producing significant alignments: (Bits) Value
AT5G12890.1 | Symbols: | UDP-Glycosyltransferase superfamily p... 2290 0.0
> AT5G12890.1 | Symbols: | UDP-Glycosyltransferase superfamily
protein | chr5:4069577-4071227 REVERSE LENGTH=1651
Length=1651
Score = 2290 bits (1240), Expect = 0.0
Identities = 1416/1501 (94%), Gaps = 11/1501 (1%)
Strand=Plus/Plus
Query 16 ctctGCAATGGCGGACGCTAAACCCAGAAATCTGAGAATCGTGATGTTCCCTTTCATGGC 75
||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 97 CTCGGCAATGGCGGAAGCTAAACCCAGAAATCTGAGAATCGTGATGTTCCCTTTCATGGG 156
Query 76 ACAAGGCCATATCATCCCTTTTGTAGCTTTAGCCCTTCGTTTAGA-AA-A-GATGATGAT 132
|||||||||||||||||| |||||||||||||||||||||||||| || | ||||| ||
Sbjct 157 ACAAGGCCATATCATCCCGTTTGTAGCTTTAGCCCTTCGTTTAGAGAAGATTATGATTAT 216
Query 133 GAACAGAGCCAACAAAACCATCATCTCTATGATCAATACTCCTTTGAACATCCCCAAAAT 192
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 217 GAACAGAGCCAACAAAACCACCATCTCTATGATCAATACTCCTTCGAACATCCCCAAAAT 276
Query 193 ACGCTCCAATCTTCCTCCTGAATCCTCCATAAGCCTCATCGAGTTACCTTTCAACAGCTC 252
||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 277 ACGCTCCAATCTTCCACCTGAATCCTCCATAAGTCTCATAGAGTTACCTTTCAACAGCTC 336
Query 253 CGATCACGGCCTTCCTCACGACGCCGAGAATTTCGATTCTCTTCCTTACTCTCTCGTCAT 312
||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 337 TGATCATGGCCTTCCTCACGACGGCGAGAATTTCGATTCTCTTCCTTACTCTCTCGTCAT 396
Query 313 CAGCCTTCTTGAAGCTTCTACGTCGCTTCGTGAGCCCTTTCGAGACCTGATGAAGAAGAT 372
|||||||||||||||||||| ||||||||||||||||||||||||| | |||| ||||||
Sbjct 397 CAGCCTTCTTGAAGCTTCTAGGTCGCTTCGTGAGCCCTTTCGAGACTTCATGACGAAGAT 456
Query 373 CTTGAAGGAAGAAGATGATGAGCAGAGCTCGGTTATGGTGATCGGTGATTTCTTCTTGGG 432
||||||||||| | | | | ||||||||||||||| |||||||||||||||||||||||
Sbjct 457 CTTGAAGGAAG-A-A-G--G-GCAGAGCTCGGTTATAGTGATCGGTGATTTCTTCTTGGG 510
Query 433 TTGGATCGGTAAGGTTTGCAAAGAGATTGGTGTTTATTCAGTGATCTTTAGTGCTTCTGG 492
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 511 TTGGATCGGTAAGGTTTGCAAAGAGGTTGGTGTTTATTCAGTGATCTTTAGTGCTTCTGG 570
Query 493 TGCTTTTGGGTTAGGTTGTTATAGATCCATATGGTTAAACTTGCCACATAAAGAAACCAA 552
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 571 TGCTTTTGGTTTAGGTTGTTATAGATCCATATGGTTAAACTTGCCACATAAAGAAACCAA 630
Query 553 ACAAGATCAGTTTCTCTTAGATGATTTTCCAGAAGCAGGGGGGATTGAGAAAACTCAGTT 612
||||||||||||||||||||||||||| || |||||||||| ||||||||||||||||||
Sbjct 631 ACAAGATCAGTTTCTCTTAGATGATTTCCCTGAAGCAGGGGAGATTGAGAAAACTCAGTT 690
Query 613 GAATTCTTTCATGTTAGAAGCTGATGGAACGGATGACTGGTCGGTTTTCATGAAGAAGAC 672
|||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||
Sbjct 691 GAATTCTTTCATGTTAGAAGCTGATGGAACCGATGATTGGTCTGTTTTCATGAAGAAGAT 750
Query 673 TATACCTGGATGGTCTGATTTCGATGGATTCTTGTTCAACACGGTTGCGGAAATCGATCA 732
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 751 TATACCTGGATGGTCTGACTTCGATGGATTCTTGTTCAACACGGTTGCTGAAATCGATCA 810
Query 733 GATTGGATTGTCCTACTTCCGTAGAACAACCGGTGTTCCGGTTTGGCCTGTCGGGCCGGT 792
||| ||||| |||||||||||||||| ||||||||||||||||||||| || ||||||||
Sbjct 811 GATGGGATTATCCTACTTCCGTAGAATAACCGGTGTTCCGGTTTGGCCAGTTGGGCCGGT 870
Query 793 TTTGAATTCTCCTGACAAGAAGGTGGGATCAAGGTCGACAGAGGAAGCCGTGAAGGCATG 852
|||||| ||||| || |||||||||||||| ||||||||||||||||| |||||| ||||
Sbjct 871 TTTGAAGTCTCCGGATAAGAAGGTGGGATCGAGGTCGACAGAGGAAGCAGTGAAGTCATG 930
Query 853 GCTTGACTCAAAACCGGACCATTCGGTTGTGTACGTATGTTTTGGTTCAATGAACTCGAT 912
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 931 GCTTGACTCAAAACCGGACCATTCGGTTGTGTACGTATGTTTCGGTTCAATGAACTCGAT 990
Query 913 TTTGCAAACGCATATGTTGGAATTGGCTATGGCATTAGAGAGTAGCGAGAAAAACTTCAT 972
|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 991 TTTGCAAACGCATATGTTAGAATTGGCTATGGCATTAGAGAGTAGCGAGAAGAACTTCAT 1050
Query 973 ATGGGTAGTGAGGCCGCCGATAGGAGTGGAGGTGAAGAGTGAGTTTGATGTGAAAGAGTA 1032
|||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||| |||
Sbjct 1051 ATGGGTGGTGAGGCCGCCCATAGGTGTGGAGGTGAAGAGTGAGTTTGATGTGAAAGGGTA 1110
Query 1033 TCTACCGGAAGGATTTGAGGAAAGAATAACAAGATCAGAAAGAGGGTTGA-TTGTGAAGA 1091
|||||||||||||||||||||||||||||||||||| ||||||||||| | |||||||||
Sbjct 1111 TCTACCGGAAGGATTTGAGGAAAGAATAACAAGATCGGAAAGAGGGTT-ACTTGTGAAGA 1169
Query 1092 AATGGGCACCACAGGTTGATATATTGTCACACAAGGCAACATGTGTGTTTTTGAGTCATT 1151
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1170 AATGGGCACCACAAGTTGATATATTGTCACACAAGGCAACATGTGTGTTTTTGAGTCATT 1229
Query 1152 GCGGATGGAACTCTATACTCGAATCGCTTAGCCACGGTGTGCCATTGCTCGGATGGCCTA 1211
||||||||||||| ||||||||||| |||||||||||||||||| ||||||||||||| |
Sbjct 1230 GCGGATGGAACTCGATACTCGAATCACTTAGCCACGGTGTGCCACTGCTCGGATGGCCCA 1289
Query 1212 TGGCAGCCGAGCAATTCTTCAATTCTATATTGATGGAGAAACATATTGGGGTATCGGTTG 1271
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1290 TGGCAGCCGAGCAGTTCTTCAATTCCATATTGATGGAGAAACATATTGGGGTATCGGTTG 1349
Query 1272 AGGTGGCGCGTGGGAAGAGATGTGATATCAAATGTGATGAGATTGTTTCTAAGATCAAAT 1331
||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 1350 AGGTGGCGCGTGGGAAGAGATGTGAGATCAAATGTGATGACATTGTTTCTAAGATCAAAC 1409
Query 1332 TGGTGATGGAGGAGACTGAAGTAGGGAAAGAGATAAGGAAAAAGGCTAGAGAGGTGAAGG 1391
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 1410 TGGTGATGGAGGAGACTGAAGTAGGGAAAGAGATTAGGAAGAAGGCTAGAGAGGTGAAGG 1469
Query 1392 AACTAGTGAGGAGAGCAACGGAAGATGGAGTTAATGGTTCCTCTGTCATTGGTTTGGAAG 1451
| ||||||||||||||| || |||||||||||| |||||||| ||||||||||||||||
Sbjct 1470 AGTTAGTGAGGAGAGCAATGGTAGATGGAGTTAAAGGTTCCTCCGTCATTGGTTTGGAAG 1529
Query 1452 AGTTTCTTGGTCAAGCAATTGTCAAGAAAGAGGAGAATTAAGACAGTAGATGGTTTATGT 1511
||||||||| |||||||| |||||||||| |||||||| ||| |||||||||| |||||
Sbjct 1530 AGTTTCTTGACCAAGCAATGGTCAAGAAAGTGGAGAATTGAGATAGTAGATGGTATATGT 1589
Query 1512 A 1512
|
Sbjct 1590 A 1590
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74598009870
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5