BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg940751

Length=436
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G12910.1 | Symbols:  | Histone superfamily protein | chr5:40...   632    0.0  


> AT5G12910.1 | Symbols:  | Histone superfamily protein | chr5:4077162-4077557 
FORWARD LENGTH=396
Length=396

 Score =  632 bits (342),  Expect = 0.0
 Identities = 378/396 (95%), Gaps = 0/396 (0%)
 Strand=Plus/Plus

Query  21   ATGGCTCGTTCCAAGCAGACAGCTCGTAAGTCAACAGGAGGTAAGGCTCCACACTTTGCC  80
            ||||||||||| || ||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct  1    ATGGCTCGTTCGAACCAGACAGCTCGTAAGGCAACAGGAGGTAAGGCTCCACACTTCGCC  60

Query  81   ATGAGGGTAAGGCAACACTCAACTCCGCTGCTTAAGAAGCCTTATAGATACAAGCCAGGA  140
            ||||| ||| |||||||||||||||||| ||||||||| || ||||||||||||||||||
Sbjct  61   ATGAGAGTATGGCAACACTCAACTCCGCCGCTTAAGAAACCATATAGATACAAGCCAGGA  120

Query  141  ACAGTGGCCCTCAGAGAGATTAGGAAGTACCAGAAGACCACAGACTTGGTTATAAGAAAA  200
            |||||||| ||||| ||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct  121  ACAGTGGCACTCAGGGAGATCAGGAAGTACCAGAAGACCACAGACTTAGTTATAAGAAAA  180

Query  201  CTCCCTTTCCAAAGATTGGTTAAAGAGATAGCTCAGAGTCTCAAGGCAGATCTAAGGTTC  260
            ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct  181  CTCCCTTTCCAAAGACTGGTGAAAGAGATAGCTCAGAGTCTCAAGGCAGATCTAAGGTTC  240

Query  261  CAGACTGGTGCTGTTTCCGCTCTTCAAGAAGCCGCTGAAGCTTTTATGGTTGGAATGTTT  320
            ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  241  CAGACCGGTGCTGTTTCCGCTCTTCAAGAAGCCGCTGAAGCTTTTATGGTTGGAATGTTT  300

Query  321  GAGGACACCAATTTGTGTGCCCTGCATGCCAAAAGATCAACTATCATGCCTAAAGATATC  380
            ||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct  301  GAGGACACCAATTTGTGTGCCATGCATGCCAAAAGATCAACTATCATGCCTAAGGATATC  360

Query  381  CAGCTCGCTAAAAGGCTTCGAGGCGATAGGGTTTGA  416
            ||||||||||||||||||||||||||||||||||||
Sbjct  361  CAGCTCGCTAAAAGGCTTCGAGGCGATAGGGTTTGA  396



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20710312588


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5