BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg940754
Length=1369
Score E
Sequences producing significant alignments: (Bits) Value
AT5G12930.1 | Symbols: | unknown protein; Has 1807 Blast hits ... 1901 0.0
> AT5G12930.1 | Symbols: | unknown protein; Has 1807 Blast hits
to 1807 proteins in 277 species: Archae - 0; Bacteria - 0;
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other
Eukaryotes - 339 (source: NCBI BLink). | chr5:4082890-4085297
REVERSE LENGTH=1660
Length=1660
Score = 1901 bits (1029), Expect = 0.0
Identities = 1251/1356 (92%), Gaps = 23/1356 (2%)
Strand=Plus/Plus
Query 18 TCCATGGATGAACCCGGGTCGGATCCGGATCCCGGGTCTTACCCAATTCCGCCCGCTTCA 77
|||||| |||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct 73 TCCATGAATGAACCCGGTTCGGATCCGGATCCCGGGTCTTACCCAATTCCGCATGCTTCA 132
Query 78 GTCCATCTCACCCCCTTC-T-TCTCC-TCT-CTCGTTCCGCCTCTGTCAACTCACTTCAC 133
||||||||| |||| ||| | ||||| | | |||| | |||||| || |||||||| ||
Sbjct 133 GTCCATCTCGCCCCTTTCTTCTCTCCGTATACTCG-T-CGCCTC--TCTACTCACTTTAC 188
Query 134 CCGTCGCTGTCAGCCACTACAATCCTCTCGGCCGCTAGCTTACATCTCTCTCCAGGGTTT 193
|||||| || ||||| |||||||| |||| |||||||||||||||||||||||||||||
Sbjct 189 CCGTCGTTGCCAGCCTCTACAATCGTCTCCCCCGCTAGCTTACATCTCTCTCCAGGGTTT 248
Query 194 ACTCGTCAATTCCGATGAAGCCAGCTCAGCGCGATCAATCGGCGGTGGATGGAGCCGAGA 253
||||||||||||||||||||||||||||||||||||||||||||| |||| |||| ||||
Sbjct 249 ACTCGTCAATTCCGATGAAGCCAGCTCAGCGCGATCAATCGGCGGCGGATTGAGCAGAGA 308
Query 254 GGAAGCCCTCGCGTGGGAGCTCTTCACGCCTTACCAGAGATTCCTGATTGTGGCGGTCAT 313
|||| |||| |||||||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct 309 GGAATCCCTTGCGTGGGAGCTCTTCACGCCTTACCAAAGATTCCTGCTTGTGGCGGTCAT 368
Query 314 TGGTGTCGCCGCCGCTGAGTCGAAGAAGAATGGTGTCATTCGACAGCTCCAGAAATCGGT 373
|||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 369 TGGTGTCGCCGCCGCTCAGTCGAAGAAGAATGGTGTCATTCGTCAGCTCCAGAAATCAGT 428
Query 374 TGATCTCAGGGATCAGGTTCTTTCAAGCATGCAACAAAAGCTTGATGATATGTGTCAAGA 433
|||||| ||||||||| |||||||||||||||||||||||||||||||| ||||||| ||
Sbjct 429 TGATCTTAGGGATCAGCTTCTTTCAAGCATGCAACAAAAGCTTGATGATTTGTGTCATGA 488
Query 434 GCTAAATCTTGTCAAAGATCAGTCTGGAACTGTATCCAAGGTCTTAGATCATGATGATCT 493
||||||||||| ||| |||||||||||| ||||||| ||||||| |||||||||| |||
Sbjct 489 GCTAAATCTTGCCAAGGATCAGTCTGGAGCTGTATCAAAGGTCTCAGATCATGATTATCC 548
Query 494 AC-GATCAACTCCTAAAGAAAAATTTGGATCTGAGAAGATTACTTTTGTAGATTGTGGCT 552
|| | ||| ||| ||||||||| ||||||||||||| ||||| ||| |||||||||||||
Sbjct 549 ACAG-TCAGCTCTTAAAGAAAAGTTTGGATCTGAGAGGATTAATTTCGTAGATTGTGGCT 607
Query 553 GCTGGCTATGTGATCAGCATCATCACTCGTCACCTGCTATACAGGATAAAGCTCCCACAA 612
|||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct 608 GCTGGCTATGTGATCAACATCATCACTCGTCACCTGCTGTACAGGATAAAGCTCCCACAA 667
Query 613 ATCTGGTGGTTGATGCAGAGCCAGAGGAAAGGCGTATATCTTATATGTCAGATTGGTGTT 672
|||||||| |||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 668 ATCTGGTGCTTGATGCAGAGCCAGAGGAAAGGCGTATGTCTTACATGTCAGATTGGTGTT 727
Query 673 CTAGTGTCACTTCAGCTGCAGAAACCCATTTTGATAGTCTTTCGCTCGACCAAGACATGC 732
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 728 CTAGTGTCACTTCTGCTGCAGAAACCCATTTTGATAGTCTTTCACTCGACCAAGACATGC 787
Query 733 TTTCCCTCAGAAAGGAGTGTCAGGAGAAAGATGCAACAATAAAGGACTTAACTTCATTTC 792
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 788 TTTCCCTCAGAAAGGAGTGTCAAGAGAAAGATGCAACAATAAAGGACTTAACTTCATTTC 847
Query 793 TTCAGCTGACCAACAAAGCTGGTTCAAAGCGTGAAACGGAGCTTGAAGACATAATTCGCA 852
|||||||||||||||||||||||||||| || ||||| ||||||||||| || ||| |||
Sbjct 848 TTCAGCTGACCAACAAAGCTGGTTCAAAACGAGAAACAGAGCTTGAAGAGATTATTAGCA 907
Query 853 GGAAGAAGACAATAATTAAGAAGCTCAAGAGAGACGT-TCTGGTGTTAGAAGAAAAGGTC 911
|||| || || |||||||||||||||||||||||||| | ||||||||||||| ||||||
Sbjct 908 GGAAAAAAACGATAATTAAGAAGCTCAAGAGAGACGTAT-TGGTGTTAGAAGACAAGGTC 966
Query 912 ACACAGCTCACTAGGCTCCGGAGGTCCTCCTATTCACCTGCAGTCTCAAATACCCATGAA 971
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 967 ACACAGCTCACTAGGCTCCGGAGGTCCTCCTATTCACCTGCAGTCTCAAATACCCATGAG 1026
Query 972 TTCCCAATGAGAATGGATAATCTTCTTTATGATATGGATGTTCTTACAGCTACTTCATCC 1031
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1027 TTCCCAATGAGAATGGATAATCTTCTTTATGATATGGATGTTCTTACAGCTTCTTCATCC 1086
Query 1032 TCTGATTCAGAAGCTACTGTAGACACACCCC-GACGGGCTGTGCTGGAGGCTCCAGTTGA 1090
||||||||||||||||||||| ||||||||| | || |||||||||||||||||||||||
Sbjct 1087 TCTGATTCAGAAGCTACTGTAAACACACCCCAG-CGAGCTGTGCTGGAGGCTCCAGTTGA 1145
Query 1091 TTCCATAAAGGAGGAGCTATCAGCTGTGGGACAAACCCATAAATCAGCGCCAGCTAAATC 1150
|||| |||||||||| | || || ||||||||||| ||||||||||||||||||||||
Sbjct 1146 TTCCGTAAAGGAGGAACCCGCAACTTTGGGACAAACCAATAAATCAGCGCCAGCTAAATC 1205
Query 1151 CTCGACGTCACTTGTAAAAACTGTAAAGCCTCCTTCAGTAGTTAGTCCATCGACTACTCG 1210
||||||||||||||| ||| |||||||||| |||||||||||||||||||||||||||||
Sbjct 1206 CTCGACGTCACTTGTGAAATCTGTAAAGCCGCCTTCAGTAGTTAGTCCATCGACTACTCG 1265
Query 1211 GAAGCCTGTTTCCGTTTCTTCTTCCTCTTCTTCTTCAAGGATGAGACGAGGTTCTTCTAC 1270
|||||||||||| ||||||||||| | | | |||| ||||||| ||||| |||||
Sbjct 1266 GAAGCCTGTTTCAGTTTCTTCTTC-T-T-C------AAGGGTGAGACGGGGTTCCTCTAC 1316
Query 1271 AGGTGATTCAAAGAAACCTAGAAGGCCAATTCAGACCACCCCAAGAGATTCCTCTGGTTC 1330
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1317 AGGTGATTCAAAGAAACCTAGAAGGCCAATTCAGACCATCCCAAGAGATTCCTCTGGTTC 1376
Query 1331 ACATAAGAGATGGGTTTAGTAAGTATTGATCTGCTG 1366
|||||||||||||||||| ||||||||| |||||||
Sbjct 1377 ACATAAGAGATGGGTTTAATAAGTATTGGTCTGCTG 1412
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67419331935
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5