BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg940755
Length=1157
Score E
Sequences producing significant alignments: (Bits) Value
AT5G12940.1 | Symbols: | Leucine-rich repeat (LRR) family prot... 1587 0.0
> AT5G12940.1 | Symbols: | Leucine-rich repeat (LRR) family protein
| chr5:4087712-4089004 FORWARD LENGTH=1293
Length=1293
Score = 1587 bits (859), Expect = 0.0
Identities = 1056/1151 (92%), Gaps = 13/1151 (1%)
Strand=Plus/Plus
Query 1 CACAC-AAAGATCCTTTATACTATGGATACTAAGAAATCGGTAGTGATCCTATTGAGC-A 58
||||| |||||| || || ||||||||||||||||||||| ||||||||||||||| | |
Sbjct 49 CACACAAAAGATTCTCTACACTATGGATACTAAGAAATCGTTAGTGATCCTATTGA-CTA 107
Query 59 ACGTCTTCGTGTTGC-TCCTAGC-CGCCACG-GTGGTTCAATCTTGCTTACCATCCGATC 115
||||| |||| || | | || | | ||||| | || || ||||||||||| ||||| |
Sbjct 108 ACGTCGTCGTCTT-CTTGCT-TCTCTCCACGACT-GTCCATTCTTGCTTACCGTCCGACC 164
Query 116 GAGCGGCGCTTCTAGAGTTCCGGGCAAAGCTCAATGAGCCCTACATTGGAGTTTTCAACA 175
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 165 GAGCGGCGCTTCTAGAGTTCCGAGCAAAGCTCAACGAGCCCTACATTGGAGTTTTCAACA 224
Query 176 CTTGGAAAGGCCAAGACTGTTGCAATGGCTGGTATGGTGTGAGCTGCGATCCCAACACCC 235
| |||||||| | |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 225 CATGGAAAGGTCTAGACTGTTGCAAAGGCTGGTATGGTGTGAGCTGCGATCCCAACACCC 284
Query 236 GTCGAGTCGCCGGCATTACACTCCGTGGAGAATCCGAAGAACCTATTTTTCAAAAGGCAA 295
||||||||||||||||||||||||| || ||||||||||| || |||| |||||||| |
Sbjct 285 GTCGAGTCGCCGGCATTACACTCCGAGGTGAATCCGAAGACCCGCTTTTCCAAAAGGCGA 344
Query 296 AACGGAGCGGGCTAATGACCGGCTCCATTTCGCCCTCCATATGTAAACTCACTCGTCTCT 355
|||||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 345 AACGGAGCGGACTAATGACCGGCTCCATTTCGCCCTCTATATGTAAGCTCACTCGTCTCT 404
Query 356 CCGGCATCATCATCGCCGATTGGAAGGGAATTTCCGGTGGGATTCCTAGTTGCGTTGAGA 415
|||| ||||||||||| |||||||||||||| ||||||| ||||||||||||| ||||||
Sbjct 405 CCGGTATCATCATCGCTGATTGGAAGGGAATCTCCGGTGTGATTCCTAGTTGCATTGAGA 464
Query 416 ATCTTCCTTTCTTGAGACATTTAGATCTCGTCGGAAATAAAATCTCCGGCGTGATTCCGG 475
|||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 465 ATCTCCCTTTCTTGAGACATTTAGATCTCGTCGGAAATAAATTCTCCGGCGTGATTCCGG 524
Query 476 CGAATATCGGGAAGTTACTGAGGCTGAAAGTGTTGAATCTCGCCGACAATCACTTATACG 535
||||||||||||||||||||||||| |||||||||||||| || || |||||||||||||
Sbjct 525 CGAATATCGGGAAGTTACTGAGGCTTAAAGTGTTGAATCTAGCTGATAATCACTTATACG 584
Query 536 GTGTGATTCCTCCGTCGATCACGAGATTAGTGAGTTTATCGCATCTGGATCTCAGGAATA 595
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 585 GTGTGATTCCTCCGTCGATCACGAGATTAGTGAGTTTATCGCATTTGGATCTCAGGAATA 644
Query 596 ACAATATCTCGGGAGTCATACCGCGAGATATTGGTCGTTTAAAGATGGTGAGTCGTGTGC 655
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 645 ACAATATCTCGGGAGTCATACCGCGAGATATTGGTCGTTTAAAGATGGTGAGTCGTGTCC 704
Query 656 TTTTAAGCGGTAACAAAATCTCGGGTCAAATACCCGAATCTCTGACCCGGATCTACCGTC 715
||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |
Sbjct 705 TTTTAAGCGGTAACAAAATCTCGGGTCAAATACCCGATTCTCTGACCCGGATATACCGGC 764
Query 716 TCGCGGATCTCGAACTCTCAATGAACCGAATCACCGGTCCGATTCCGGCTTCGTTCGGCA 775
|||||||||| || ||||| ||||||||| |||||||||||||||||||||||||||| |
Sbjct 765 TCGCGGATCTTGAGCTCTCGATGAACCGACTCACCGGTCCGATTCCGGCTTCGTTCGGTA 824
Query 776 AAATGTCGGTGCTCGCAACATTT-AACCTCGGCGGAAACTTAATTTCCGGCGA-GATTCC 833
|||||||||||||||| || | | || |||| || ||||| || ||||| | ||||||
Sbjct 825 AAATGTCGGTGCTCGCGAC-TCTCAATCTCGATGGGAACTTGATCTCCGGT-ATGATTCC 882
Query 834 GGGGAGTCTAATGGCATCATCGATCTCGAATTTGAATCTGAGCGGGAACCTTATCCCCGG 893
|||||||||| ||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 883 GGGGAGTCTATTGGCATCATCGATCTCGAATTTGAATCTGAGCGGGAATCTTATAACCGG 942
Query 894 ACGGATACCAAACACGTTCGGGCCGAGATCGTACTTCACGGTGCTGGACCTCGCGAACAA 953
| | ||||| |||||||| || |||||||||||||||||||||||||| || ||||||||
Sbjct 943 AAGTATACCTAACACGTTTGGACCGAGATCGTACTTCACGGTGCTGGATCTTGCGAACAA 1002
Query 954 TCGTCTTCAGGGACCAATTCCGACCAGTATCGCGGCGGCGTCGTTTATTGGTCACCTTGA 1013
||||||||||||||| |||||| | |||||| ||||||||||||||||||||||||||||
Sbjct 1003 TCGTCTTCAGGGACCGATTCCGGCGAGTATCACGGCGGCGTCGTTTATTGGTCACCTTGA 1062
Query 1014 CGTGAGCCATAACCATCTGTGTGGGAAGATTCCGACGGGATCTCCTTTTGATCATCTCGA 1073
|||||||||||||||| |||||||||||||||||| ||||||||| ||||||||||| ||
Sbjct 1063 CGTGAGCCATAACCATTTGTGTGGGAAGATTCCGATGGGATCTCCGTTTGATCATCTTGA 1122
Query 1074 TGCGACGTCGTTTGCATACAATACTTGTCTTTGTGGAAAGCCTCTTGGGAATTGTAAGAA 1133
|||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1123 CGCGACGTCGTTTGCTTACAATGCTTGTCTTTGTGGAAAGCCTCTTGGGAATTGTAAGAA 1182
Query 1134 ATAATTAATTA 1144
|||||||||||
Sbjct 1183 ATAATTAATTA 1193
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56776816395
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5