BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg940755 Length=1157 Score E Sequences producing significant alignments: (Bits) Value AT5G12940.1 | Symbols: | Leucine-rich repeat (LRR) family prot... 1587 0.0 > AT5G12940.1 | Symbols: | Leucine-rich repeat (LRR) family protein | chr5:4087712-4089004 FORWARD LENGTH=1293 Length=1293 Score = 1587 bits (859), Expect = 0.0 Identities = 1056/1151 (92%), Gaps = 13/1151 (1%) Strand=Plus/Plus Query 1 CACAC-AAAGATCCTTTATACTATGGATACTAAGAAATCGGTAGTGATCCTATTGAGC-A 58 ||||| |||||| || || ||||||||||||||||||||| ||||||||||||||| | | Sbjct 49 CACACAAAAGATTCTCTACACTATGGATACTAAGAAATCGTTAGTGATCCTATTGA-CTA 107 Query 59 ACGTCTTCGTGTTGC-TCCTAGC-CGCCACG-GTGGTTCAATCTTGCTTACCATCCGATC 115 ||||| |||| || | | || | | ||||| | || || ||||||||||| ||||| | Sbjct 108 ACGTCGTCGTCTT-CTTGCT-TCTCTCCACGACT-GTCCATTCTTGCTTACCGTCCGACC 164 Query 116 GAGCGGCGCTTCTAGAGTTCCGGGCAAAGCTCAATGAGCCCTACATTGGAGTTTTCAACA 175 |||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| Sbjct 165 GAGCGGCGCTTCTAGAGTTCCGAGCAAAGCTCAACGAGCCCTACATTGGAGTTTTCAACA 224 Query 176 CTTGGAAAGGCCAAGACTGTTGCAATGGCTGGTATGGTGTGAGCTGCGATCCCAACACCC 235 | |||||||| | |||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 225 CATGGAAAGGTCTAGACTGTTGCAAAGGCTGGTATGGTGTGAGCTGCGATCCCAACACCC 284 Query 236 GTCGAGTCGCCGGCATTACACTCCGTGGAGAATCCGAAGAACCTATTTTTCAAAAGGCAA 295 ||||||||||||||||||||||||| || ||||||||||| || |||| |||||||| | Sbjct 285 GTCGAGTCGCCGGCATTACACTCCGAGGTGAATCCGAAGACCCGCTTTTCCAAAAGGCGA 344 Query 296 AACGGAGCGGGCTAATGACCGGCTCCATTTCGCCCTCCATATGTAAACTCACTCGTCTCT 355 |||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||| Sbjct 345 AACGGAGCGGACTAATGACCGGCTCCATTTCGCCCTCTATATGTAAGCTCACTCGTCTCT 404 Query 356 CCGGCATCATCATCGCCGATTGGAAGGGAATTTCCGGTGGGATTCCTAGTTGCGTTGAGA 415 |||| ||||||||||| |||||||||||||| ||||||| ||||||||||||| |||||| Sbjct 405 CCGGTATCATCATCGCTGATTGGAAGGGAATCTCCGGTGTGATTCCTAGTTGCATTGAGA 464 Query 416 ATCTTCCTTTCTTGAGACATTTAGATCTCGTCGGAAATAAAATCTCCGGCGTGATTCCGG 475 |||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 465 ATCTCCCTTTCTTGAGACATTTAGATCTCGTCGGAAATAAATTCTCCGGCGTGATTCCGG 524 Query 476 CGAATATCGGGAAGTTACTGAGGCTGAAAGTGTTGAATCTCGCCGACAATCACTTATACG 535 ||||||||||||||||||||||||| |||||||||||||| || || ||||||||||||| Sbjct 525 CGAATATCGGGAAGTTACTGAGGCTTAAAGTGTTGAATCTAGCTGATAATCACTTATACG 584 Query 536 GTGTGATTCCTCCGTCGATCACGAGATTAGTGAGTTTATCGCATCTGGATCTCAGGAATA 595 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 585 GTGTGATTCCTCCGTCGATCACGAGATTAGTGAGTTTATCGCATTTGGATCTCAGGAATA 644 Query 596 ACAATATCTCGGGAGTCATACCGCGAGATATTGGTCGTTTAAAGATGGTGAGTCGTGTGC 655 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 645 ACAATATCTCGGGAGTCATACCGCGAGATATTGGTCGTTTAAAGATGGTGAGTCGTGTCC 704 Query 656 TTTTAAGCGGTAACAAAATCTCGGGTCAAATACCCGAATCTCTGACCCGGATCTACCGTC 715 ||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| | Sbjct 705 TTTTAAGCGGTAACAAAATCTCGGGTCAAATACCCGATTCTCTGACCCGGATATACCGGC 764 Query 716 TCGCGGATCTCGAACTCTCAATGAACCGAATCACCGGTCCGATTCCGGCTTCGTTCGGCA 775 |||||||||| || ||||| ||||||||| |||||||||||||||||||||||||||| | Sbjct 765 TCGCGGATCTTGAGCTCTCGATGAACCGACTCACCGGTCCGATTCCGGCTTCGTTCGGTA 824 Query 776 AAATGTCGGTGCTCGCAACATTT-AACCTCGGCGGAAACTTAATTTCCGGCGA-GATTCC 833 |||||||||||||||| || | | || |||| || ||||| || ||||| | |||||| Sbjct 825 AAATGTCGGTGCTCGCGAC-TCTCAATCTCGATGGGAACTTGATCTCCGGT-ATGATTCC 882 Query 834 GGGGAGTCTAATGGCATCATCGATCTCGAATTTGAATCTGAGCGGGAACCTTATCCCCGG 893 |||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |||| Sbjct 883 GGGGAGTCTATTGGCATCATCGATCTCGAATTTGAATCTGAGCGGGAATCTTATAACCGG 942 Query 894 ACGGATACCAAACACGTTCGGGCCGAGATCGTACTTCACGGTGCTGGACCTCGCGAACAA 953 | | ||||| |||||||| || |||||||||||||||||||||||||| || |||||||| Sbjct 943 AAGTATACCTAACACGTTTGGACCGAGATCGTACTTCACGGTGCTGGATCTTGCGAACAA 1002 Query 954 TCGTCTTCAGGGACCAATTCCGACCAGTATCGCGGCGGCGTCGTTTATTGGTCACCTTGA 1013 ||||||||||||||| |||||| | |||||| |||||||||||||||||||||||||||| Sbjct 1003 TCGTCTTCAGGGACCGATTCCGGCGAGTATCACGGCGGCGTCGTTTATTGGTCACCTTGA 1062 Query 1014 CGTGAGCCATAACCATCTGTGTGGGAAGATTCCGACGGGATCTCCTTTTGATCATCTCGA 1073 |||||||||||||||| |||||||||||||||||| ||||||||| ||||||||||| || Sbjct 1063 CGTGAGCCATAACCATTTGTGTGGGAAGATTCCGATGGGATCTCCGTTTGATCATCTTGA 1122 Query 1074 TGCGACGTCGTTTGCATACAATACTTGTCTTTGTGGAAAGCCTCTTGGGAATTGTAAGAA 1133 |||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1123 CGCGACGTCGTTTGCTTACAATGCTTGTCTTTGTGGAAAGCCTCTTGGGAATTGTAAGAA 1182 Query 1134 ATAATTAATTA 1144 ||||||||||| Sbjct 1183 ATAATTAATTA 1193 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 56776816395 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5