BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg940756

Length=301
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G55940.1 | Symbols: emb2731 | Uncharacterised protein family...   267    6e-71
  AT5G51620.2 | Symbols:  | Uncharacterised protein family (UPF01...   187    5e-47


> AT5G55940.1 | Symbols: emb2731 | Uncharacterised protein family 
(UPF0172) | chr5:22655998-22658048 REVERSE LENGTH=1039
Length=1039

 Score =  267 bits (144),  Expect = 6e-71
 Identities = 146/147 (99%), Gaps = 0/147 (0%)
 Strand=Plus/Plus

Query  96   ATAGAGGAGCATTATGTGGCTCAAGGTTTAAGTATTGTTGGATACTTTCATGCAAACGAG  155
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  377  ATAGAGGAGCATTATGTGGCTCAAGGTTTAAGTATTGTTGGATACTTTCATGCAAACGAG  436

Query  156  AGGTTTGATGACGTTGAGCTCTGTGGTGTGGCTAAAAACATTGGTGATCTCATTTCTCGC  215
            ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct  437  AGGTTTGATGACGTTGAGCTCTGTGGTGTGGCTAAAAACATTGGTGATCACATTTCTCGC  496

Query  216  TATTTCCCTCAGGCACCAATTCTCTTG  242
            |||||||||||||||||||||||||||
Sbjct  497  TATTTCCCTCAGGCACCAATTCTCTTG  523


> AT5G51620.2 | Symbols:  | Uncharacterised protein family (UPF0172) 
| chr5:20967098-20968027 FORWARD LENGTH=324
Length=324

 Score =  187 bits (101),  Expect = 5e-47
 Identities = 103/104 (99%), Gaps = 0/104 (0%)
 Strand=Plus/Plus

Query  96   ATAGAGGAGCATTATGTGGCTCAAGGTTTAAGTATTGTTGGATACTTTCATGCAAACGAG  155
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  78   ATAGAGGAGCATTATGTGGCTCAAGGTTTAAGTATTGTTGGATACTTTCATGCAAACGAG  137

Query  156  AGGTTTGATGACGTTGAGCTCTGTGGTGTGGCTAAAAACATTGG  199
            ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  138  AGGTTTGATGATGTTGAGCTCTGTGGTGTGGCTAAAAACATTGG  181



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13924166473


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5