BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg940762
Length=970
Score E
Sequences producing significant alignments: (Bits) Value
AT5G12980.1 | Symbols: | Cell differentiation, Rcd1-like prote... 1496 0.0
> AT5G12980.1 | Symbols: | Cell differentiation, Rcd1-like protein
| chr5:4105383-4108184 REVERSE LENGTH=1160
Length=1160
Score = 1496 bits (810), Expect = 0.0
Identities = 915/964 (95%), Gaps = 13/964 (1%)
Strand=Plus/Plus
Query 18 CTCTAAATGGCTAATCTTCCTCCTTCGCTCTCCATGAAATCTGTCGCTCTCTCAGGAG-- 75
|||| ||||||||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct 41 CTCT-AATGGCTAATCTTCCTCCTCCGCTCTCCATGAAATCTGTCGCCCTCTCAGGAGCT 99
Query 76 -------CTTCTTCTTCCTCCAGCAACGATCGGAAGCTATTATCGGCGGAGCAGTTGATT 128
||||||||||||||| ||||||||||||||||| ||||||||||||||| |||
Sbjct 100 TCTTCTCCTTCTTCTTCCTCCAACAACGATCGGAAGCTATCATCGGCGGAGCAGTTAATT 159
Query 129 CTCGATCTCAGCAATCCCGAACTCAGGGAAAATGCTCTTCACGAGTTGTCCAAGAAGAGA 188
|||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||
Sbjct 160 CTCGATCTCAGCAATCCCGAACTCAGAGAAAATGCACTTCACGAGTTGTCTAAGAAGAGA 219
Query 189 GAGATCTTTCAAGATTTGGCGCCGCTTTTATGGCATTCTGTTGGTACCATTCCTGCTCTT 248
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 220 GAGATCTTTCAAGATTTGGCTCCGCTTTTATGGCATTCTGTTGGTACCATTCCTGCTCTT 279
Query 249 CTACAGGAGATTATCTCAGTTTACCCTGTCCTATCTCCTCCAACCATGACTCCTGCTCAA 308
||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct 280 CTACAGGAGATTATCGCAGTTTACCCTGCCCTATCTCCTCCAACCATGACTCCTGCTCAA 339
Query 309 TCAAACAGGGTCTGCAATGCACTTGCGCTTCTTCAGTGTGTTGCTTCTCATACTGATACG 368
|| |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 340 TCTAACAGGGTGTGCAATGCACTTGCTCTTCTTCAGTGTGTTGCTTCTCATACTGATACG 399
Query 369 AGGATGTTGTTCTTGAAAGCCCATCTGCCATTGTACCTGTATGCTTTCTTGAATACATCA 428
|| ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 400 AGAATGTTGTTCCTAAAAGCCCATCTGCCATTGTACCTGTATGCTTTCTTGAATACATCA 459
Query 429 AGCAAGTCAAGACCGTTTGAGTACCTGCGACTGACTAGCCTGGGGGTTATTGGTGCACTT 488
||||| ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct 460 AGCAAATCAAGACCGTTTGAGTACCTGCGGCTGACTAGCTTGGGGGTTATTGGTGCACTT 519
Query 489 GTTAAGGTTGATGATACTGAAGTGATAAGATTCCTTCTTCAAACTGAAATTGTCCCATTG 548
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 520 GTTAAGGTTGATGATACTGAAGTGATCAGATTCCTTCTTCAAACTGAGATTGTCCCATTG 579
Query 549 TGCCTCCGGACAATGGAAAATGGCAGCGAGTTATCAAAGACCGTTGCTACTTTCATTGTT 608
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 580 TGCCTCCGGACAATGGAGAATGGCAGCGAGTTATCAAAGACTGTTGCTACTTTCATTGTT 639
Query 609 CAGAAAGTTTTGCTGGACGATGTTGGGCTTGAGTACATGTGCACCACAGCGGAAAGATTC 668
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 640 CAGAAAGTTTTGCTGGACGATGTTGGGCTTGAGTACATGTGCACGACAGCGGAGAGATTC 699
Query 669 TTTGCTCTGGGTCGGGTTTTGGGAAATATGGTTACTTCACTTGCAGAAGGGCCATCTC-C 727
|||||||||||||||||||||||||||||||||||||||||||||||||| || || | |
Sbjct 700 TTTGCTCTGGGTCGGGTTTTGGGAAATATGGTTACTTCACTTGCAGAAGGACCGTC-CGC 758
Query 728 TAGGCTACTAAAGCACATCATACGCTGCTATCTCCGTTTGACAGATAACCCCAGAGCATG 787
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 759 TAGGCTACTAAAGCACATCATACGCTGCTATCTTCGCTTGACAGATAACCCCAGAGCATG 818
Query 788 CGATGCACTTGGAAGTTGCCTTCCAGATCTTCTGAGGGATGCTACCTTCAGCGGTTGTCT 847
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 819 CGATGCACTTGGAAGTTGCCTTCCAGATCTTCTGAGGGATGCTACTTTCAGTGGTTGTCT 878
Query 848 CTATGATGATCCACCTGCAATGCAATGGCTGCAGCAACTGCTCCACAACATTAAGGTTGG 907
||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 879 CTATGATGACCCACCTGCAATGCAATGGCTGCAGCAACTGCTCCACAACGTTAACGTTGG 938
Query 908 CGGGAGAGCACCTCAAGGGTTGGCTCATATGTTTGTGAATTAAATCAAACCCT-ATAGTC 966
|||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct 939 CGGGAGAGCACCTCAAGGGTTGGCTCATATGTTTGTGAATTAAATCGAACCCTTATAGTC 998
Query 967 TGGG 970
||||
Sbjct 999 TGGG 1002
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47471268915
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5