BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg940770

Length=420
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G18870.1 | Symbols:  | E2F/DP family winged-helix DNA-bindin...  91.6    5e-18


> AT4G18870.1 | Symbols:  | E2F/DP family winged-helix DNA-binding 
domain | chr4:10346168-10347228 FORWARD LENGTH=878
Length=878

 Score = 91.6 bits (49),  Expect = 5e-18
 Identities = 87/106 (82%), Gaps = 0/106 (0%)
 Strand=Plus/Plus

Query  17   TATGAGATGGTGGACGATCCTTCAACGGATTCAATGATCTCGTGGAGCGAGAGCGGCAAG  76
            ||||| ||||| || |||| ||||   |||||||| || || |||||| |||||||||||
Sbjct  56   TATGATATGGTCGATGATCTTTCATTAGATTCAATAATTTCTTGGAGCCAGAGCGGCAAG  115

Query  77   AGTTTCATCATTTGGAATCAACCTGAGTTTTGCAATAATGTTCTTC  122
            ||||||||||||||||||| |   || |||| ||| ||| ||||||
Sbjct  116  AGTTTCATCATTTGGAATCCAGAAGAATTTTACAACAATCTTCTTC  161



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19906028604


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5