BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg940771
Length=2182
Score E
Sequences producing significant alignments: (Bits) Value
AT5G13060.1 | Symbols: ABAP1 | ARMADILLO BTB protein 1 | chr5:4... 3350 0.0
> AT5G13060.1 | Symbols: ABAP1 | ARMADILLO BTB protein 1 | chr5:4142958-4147091
FORWARD LENGTH=2353
Length=2353
Score = 3350 bits (1814), Expect = 0.0
Identities = 2071/2191 (95%), Gaps = 33/2191 (2%)
Strand=Plus/Plus
Query 1 TGATCTCAAACCATCCGCCAATGGAGAA-C--CCCAAGCGCCAGCGAACAACGTGCCTCG 57
|||| ||||||||||||||||||||||| | |||||||||||||||||||| ||||||
Sbjct 65 TGATATCAAACCATCCGCCAATGGAGAACCATCCCAAGCGCCAGCGAACAACACGCCTCG 124
Query 58 CCGCCAGAAACTTGAAGCGAAAACTCAGTC-CGAACACAGATGTAGCGCCAATCGTCACG 116
|||||||||||||||||||||||||||||| | |||||||||| |||||||||||||||
Sbjct 125 CCGCCAGAAACTTGAAGCGAAAACTCAGTCAC-AACACAGATGGAGCGCCAATCGTCACA 183
Query 117 CAATTTATTGATGTTGATGACGAACACC-TAGATCTCGTTGTCGCCATCCGCCGTCACGT 175
||| |||||||| |||| ||||||| || |||||||||| ||||| || |||||||||||
Sbjct 184 CAACTTATTGATATTGACGACGAAC-CCATAGATCTCGTCGTCGCGATTCGCCGTCACGT 242
Query 176 CGAGGTTCTTAACTCCTGCTTCTCAGATCCTGATTTTGATCGCGAGGCTGTCAACGAAGC 235
|||||||||||||||| |||||||||||||||||||||||| ||| |||||||| |||||
Sbjct 243 CGAGGTTCTTAACTCCAGCTTCTCAGATCCTGATTTTGATCACGAAGCTGTCAAAGAAGC 302
Query 236 TGCTGCTGATATCGCCGATTTAGCTAAAATCGACGAAAATGTGGAAATCATCGTGGAAAA 295
||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||
Sbjct 303 TGCTGCTGATATCGCCGATTTGGCTAAAATCGATGAAAATGTTGAAATCATCGTGGAAAA 362
Query 296 TGGAGCAATCCCTGCTCTGGTGAAATATCTGGAATGCCCGTGGCCTTTGGAAGTTGGCGG 355
|||||| ||||||||| |||||| ||||||||||| || ||||||| |||| | ||
Sbjct 363 TGGAGCGATCCCTGCTTTGGTGAGATATCTGGAAT--CC----CCTTTGGTAGTTTGTGG 416
Query 356 CGATGTTCCCAACTCTTGCGATCATAAGCTAGAGAGAGATTGTGCTATTGCTCTTGGACT 415
| |||||||||| |||||||| || |||||||||| |||||||||| |||||||||||||
Sbjct 417 CAATGTTCCCAAATCTTGCGAGCACAAGCTAGAGAAAGATTGTGCTCTTGCTCTTGGACT 476
Query 416 TATTGCTGCGATTCAGCCTGGTTACCAGCAGCTCATTGTGGATGCTGGAGCCATAGTTCC 475
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 477 TATTGCTGCGATTCAGCCTGGTTACCAGCAGCTTATTGTGGATGCTGGAGCCATAGTTCC 536
Query 476 CACCGTGAAGTTGTTGAAGAGACGGGTGATATGTGGTGGTCCTGGTGGATGCATGTTTGT 535
||||||||||||||||||||||| ||| | || | ||||| |||||||||||
Sbjct 537 CACCGTGAAGTTGTTGAAGAGAC--GTG----G-GG-AAT-GTGGTGAATGCATGTTTGC 587
Query 536 TAATGCTGCTATTAGGAGAGCCGCTGATATAATCACTAACATTGCTCATGACAATCCAAG 595
|||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 588 TAATGCTGTTATTAGGAGAGCCGCTGATATAATTACTAACATTGCTCATGACAATCCAAG 647
Query 596 GATTAAAACAAATATAAGGGTTGAAGGTGGCATTCCACCACTTGTTGAGCTTCTAAATTT 655
|||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct 648 GATTAAAACAAATATAAGGGTTGAAGGTGGCATTGCACCACTTGTTGAGCTTCTCAATTT 707
Query 656 TCCGGATGTTAAAGTACAGAGGGCTGCAGCAGGGGCCTTGCGAACAATTTCATTTAGAAA 715
||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct 708 TCCGGATGTTAAAGTACAGAGGGCTGCGGCAGGGGCCTTGCGAACAGTTTCATTTAGAAA 767
Query 716 CGACGAGAACAAGACCCAAATTGTGGAGTTGAATGCTTTACCCACGCTTGTATTGATGCT 775
|||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 768 CGACGAGAACAAGAGTCAAATTGTGGAGTTGAATGCTTTACCCACACTTGTATTGATGCT 827
Query 776 TCAATCAAAAGATTCTTCTGTGCACGGGGAAGCGATTGGGGCAATTGGAAATCTTGTCCA 835
||||||| |||||||| | || ||||||||||||||||||||||||||||||||||||||
Sbjct 828 TCAATCACAAGATTCTACCGTTCACGGGGAAGCGATTGGGGCAATTGGAAATCTTGTCCA 887
Query 836 CTCATCTCCTGACATCAAGAAAGAGGTTATCCGTGCTGGTGCCTTACAACCAGTAATTGG 895
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 888 CTCATCTCCTGACATCAAGAAAGAGGTTATCCGTGCTGGTGCCTTACAACCAGTAATTGG 947
Query 896 TCTACTTAGCTCCACTTGTTTGGAAACACAGAGAGAAGCAGCCTTATTAATAGGTCAATT 955
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 948 TCTACTTAGCTCCACTTGTTTGGAAACACAGAGAGAAGCAGCATTATTAATAGGTCAATT 1007
Query 956 TGCTGCGCCTGATTCAGATTGCAAGGTGCACATTGCCCAGAGAGGTGCCATTACACCACT 1015
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1008 TGCTGCGCCTGATTCAGATTGCAAGGTGCACATTGCCCAGAGAGGTGCCATTACACCACT 1067
Query 1016 GATTAAGATGCTTGAATCATCAGATGAGCAGGTCGTGGAAATGTCAGCTTTTGCTCTTGG 1075
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1068 GATTAAGATGCTTGAATCATCAGATGAGCAGGTCGTGGAAATGTCAGCTTTTGCTCTTGG 1127
Query 1076 TCGTTTGGCTCAGGACGCACACAATCAAGCTGGCATTGCACATAGAGGAGGCATCATCTC 1135
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1128 TCGTTTGGCTCAGGACGCACACAATCAAGCTGGCATTGCACATAGAGGAGGCATCATCTC 1187
Query 1136 ATTACTAAATCTTCTTGATGTGAAAACGGGGTCTGTGCAACACAATGCTGCATTTGCTTT 1195
| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1188 ACTACTAAATCTTCTTGATGTGAAAACGGGGTCTGTGCAACACAATGCTGCCTTTGCTTT 1247
Query 1196 GTATGGCCTTGCAGATAACGAGGAAAACGTAGCAGATTTCGTAAAGGCTGGAGGTATTCA 1255
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1248 GTATGGCCTTGCAGATAACGAGGAAAACGTAGCAGATTTCATAAAGGCTGGAGGTATTCA 1307
Query 1256 AAAGCTTCAAGATGACAACTTTACTGTCCAACCGACTAGAGATTGTGTGGTTCGGACATT 1315
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1308 AAAGCTTCAAGATGACAACTTTACTGTCCAACCGACTAGAGATTGTGTGGTTCGGACATT 1367
Query 1316 GAAGAGGCTACAGAACAAGATTCACGGACCTGTACTAAACCAATTATTGTACCTAATGAG 1375
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1368 GAAGAGGCTGCAGAACAAGATTCACGGACCTGTACTAAACCAATTATTGTACCTAATGAG 1427
Query 1376 AACCGCAGAGAAGACTA-TACAAATACGAATTGCTCTGGCTCTTGCACATCTTTGTGACC 1434
|||||| |||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1428 AACCGCTGAGAAGAC-AGTACAAATACGAATTGCTCTGGCTCTTGCACATCTTTGTGACC 1486
Query 1435 CTAAAGATGGAAAACTAAT-TTTCATTGATAACAATGGAGTAGAGTTTTTGTTGGAGCTT 1493
|||||||||||||| |||| ||| |||||||||||||||||||||||||||||||| |||
Sbjct 1487 CTAAAGATGGAAAATTAATCTTT-ATTGATAACAATGGAGTAGAGTTTTTGTTGGAACTT 1545
Query 1494 CTCTATTTCTCAAGCA-TCAAGCAGCAGAGATATAGTTCATGTGCTTTATACGAATTAGC 1552
|||||||||||||||| | ||||||||||||||||||||| ||||||||||||| |||||
Sbjct 1546 CTCTATTTCTCAAGCAAT-AAGCAGCAGAGATATAGTTCAAGTGCTTTATACGAGTTAGC 1604
Query 1553 TAAAAAGGCTACATCTTTTGCACCGGAGGATTCAGCTCCTTCTTCACCCACCCAACAGGT 1612
|||||| |||||||| |||||||| |||||||||||||||| ||||||||| ||||||||
Sbjct 1605 TAAAAAAGCTACATCCTTTGCACCAGAGGATTCAGCTCCTTGTTCACCCACACAACAGGT 1664
Query 1613 GTTTTTGGGTGAAGAATTCGTGAACAACCCTACTCTGTCTGATGTCACATTCCTAATTGG 1672
|||| |||||||| |||||||||||||||| ||| |||| |||||||||||||||||||
Sbjct 1665 GTTTCTGGGTGAAAAATTCGTGAACAACCCCACTATGTCCGATGTCACATTCCTAATTGA 1724
Query 1673 TGGTAAACAATTCTATGCTCACAAGATTTGCTTGGTAGCTTCCTCTGATATATTTCGTGC 1732
|||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct 1725 TGGTAAACAATTCTATGCACACAAGATTGGCTTGGTAGCTTCCTCTGATATATTTCGTGC 1784
Query 1733 AATGTTTGATGGTCTTTACAAGGAACGCAATGCTCAAAATGTGGAGATCCCAAATATAAG 1792
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1785 AATGTTTGATGGTCTTTACAAGGAACGCAATGCTCAAAATGTGGAGATACCAAATATAAG 1844
Query 1793 ATGGGAAGTGTTTGAGCTTATGATGAGGTTCATTTACTCAGGAAGAATTAACATCACCAA 1852
|||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 1845 ATGGGAAGTGTTTGAGCTTATGATGAAGTTCATTTACTCAGGAAGAATTAACATCGCCAA 1904
Query 1853 ACATTTGGCTAAAGATCTGCTTGTAGCAGCTGATCAATATCTTCTCCAAGGTCTCAAACG 1912
||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1905 ACATTTGGCAAAAGATCTGCTTGTAGCAGCTGATCAATATCTTCTCGAAGGTCTCAAACG 1964
Query 1913 TCAATGTGAATACACAATTTCACAGGAAATCTGTCTGGATAACATACCAGAAATGTATGA 1972
||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct 1965 TCAATGTGAATACACCATTGCACAGGAAATCTGTCTGGATAACATACCAGAGATGTATGA 2024
Query 1973 GTTAGCAGATACATTCAATGCTACAGCCTTAAGAAGAGCTTGCACGCTCTTTGTTCTTGA 2032
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2025 GTTAGCAGATACATTCAATGCTTCAGCCTTAAGAAGAGCTTGCACGCTCTTTGTTCTTGA 2084
Query 2033 GCATTTCACTAAGCTCAGTTCTCAATTATGGTTTGCAAAGTTTGTGAAGCAAATTATACC 2092
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 2085 GCATTTCACTAAGCTCAGCTCTCAATTATGGTTTGCAAAGTTTGTCAAGCAAATTATACC 2144
Query 2093 TGAAATCCGGAGTTACATCACTGATATTCTCACCCGGCCGGTCGAAGCTA-TCCCACCAA 2151
|||||| ||||||||||| |||||||||||||| |||||||||||||||| |||| ||||
Sbjct 2145 TGAAATTCGGAGTTACATGACTGATATTCTCACACGGCCGGTCGAAGCTAGTCCC-CCAA 2203
Query 2152 CCGTCGTATAAAACATAAAACTGGATTCCGG 2182
||||||||||||||||| | |||||||||
Sbjct 2204 CCGTCGTATAAAACATATA---GGATTCCGG 2231
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 108232375020
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5