BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg940780
Length=1993
Score E
Sequences producing significant alignments: (Bits) Value
AT5G13150.1 | Symbols: ATEXO70C1, EXO70C1 | exocyst subunit exo... 2776 0.0
> AT5G13150.1 | Symbols: ATEXO70C1, EXO70C1 | exocyst subunit exo70
family protein C1 | chr5:4172829-4174930 REVERSE LENGTH=2102
Length=2102
Score = 2776 bits (1503), Expect = 0.0
Identities = 1829/1979 (92%), Gaps = 52/1979 (3%)
Strand=Plus/Plus
Query 21 ATGGAGAAAGCTGGAAAT---CATCACGCAAATGAATCATCGGAAACTCATGTTCACAAA 77
||||||||| |||||||| ||||||||||||||||||||||||| ||||| |||||||
Sbjct 1 ATGGAGAAATCTGGAAATCACCATCACGCAAATGAATCATCGGAAAATCATGATCACAAA 60
Query 78 TCTGACGATCATGAGAATAAACAACATTCCGATGAATCGGAACAAAAACTGCATTCATCG 137
||||| ||||| |||||||||||||||||| | || | ||||||||||||||
Sbjct 61 TCTGAAGATCACGAGAATAAACAACATTCC---G-AT--G------AACTGCATTCATCG 108
Query 138 ACGCCGG------AATCGGAATCCTCGGAACAGAGCCTTGTTC-AGGTGATGGAGGCCGT 190
||||||| ||||||||||||| ||||| ||||| | || |||||||||| |||||
Sbjct 109 ACGCCGGAATCACAATCGGAATCCTCCGAACATAGCCTCG-TCGAGGTGATGGAAGCCGT 167
Query 191 GGACGATTTCA-TCAAAGCACTTTCAGCCGAGAAGGATCCGCCACGG-GAGATTC-CTCC 247
| |||||||| ||||| ||||||| ||||||| |||||| | || |||| || | ||
Sbjct 168 CGTCGATTTCATTCAAA-CACTTTCTTCCGAGAAAGATCCGTTA-GGAGAGA-TCTCACC 224
Query 248 GGCGGTGGAGCCATTCCCTGAGAG-GGTGGATTCATTGGTGTCAAAAATGGAATCTTCTG 306
||||||||| ||||||| ||| | ||||||||||||||||||||||||||||||||| |
Sbjct 225 AGCGGTGGAGTCATTCCCGGAG-GCGGTGGATTCATTGGTGTCAAAAATGGAATCTTCCG 283
Query 307 GGCTTGGGAGGGACGAAACAGAGGACTCTGTATTCATCGACGCCGTTAACCGGATTTCGA 366
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 284 GGCTTGGGCGGGACGAAACAGAGGACTCTGTATTCATCGACGCCGTTAACCGGATTTCGA 343
Query 367 AATCGGTTATGAGATTGAGGGAGCTTAAATTAGATTCAACTCCGGTCTCTTCTTGGTTAA 426
||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||
Sbjct 344 AATCGGTTATGAGATTGAGAGAGCTTAAATTAGATTCAACACCGGTTTCTTCTTGGTTAA 403
Query 427 ACCGGGCGAGTTCGGTTCAGCATCGTGCTGTATCTCTTCTCGACGAAGAGTTTCGTCATC 486
||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||
Sbjct 404 ACCGGGCGAGTTCGGTTCAACACCGTGCTGTTTCTCTTCTCGACGAAGAGTTTCGTCATC 463
Query 487 TTCTAGATCGTTCC--AGA-GAGGAGAAGAAG---------AAGAAC-ATCA--ACGACG 531
|||||||||||||| ||| |||||||||||| || ||| | || ||||||
Sbjct 464 TTCTAGATCGTTCCAGAGAGGAGGAGAAGAAGAACAACAACAACAACAACCACCACGACG 523
Query 532 GGAACAATTCCGATCACAACAATTCTTCAACTAACGAATCGGATCGATGCGTTTTACAAG 591
||| ||||||||||||||||||||||||||| || || || |||||||||||||||||||
Sbjct 524 GGAGCAATTCCGATCACAACAATTCTTCAACAAATGATTCAGATCGATGCGTTTTACAAG 583
Query 592 ACCAGGAAGAGG-AGGAGGAAGAAAGTTTCCCGGATTTTCCACCGGAATCGATCTCGACG 650
|||| || |||| | |||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 584 ACCATGAGGAGGCA-GAGGAAGAAAGTTTCCATGATTTTTCACCGGAATCGATCTCGACG 642
Query 651 TTGAAGAAGATCGCCGGAGCGATGATCTCCGCCGGTTACGAAGCAGAGTGTTGTATGTCA 710
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 643 TTGAAAAAGATCGCCGGAGCGATGATCTCCGCCGGTTACGAAGCAGAGTGTTGTATGTCA 702
Query 711 TACGAAATGTCGAGACGGCACGCGTTCAAGGAGGAGCTA-CGCGAGGTTGGATTCGAAGG 769
|||||||||||||||||||||||||||||||| |||||| | ||||||||||||||||||
Sbjct 703 TACGAAATGTCGAGACGGCACGCGTTCAAGGAAGAGCTAAC-CGAGGTTGGATTCGAAGG 761
Query 770 GATCAACGTTGAAGACGTGCAGAGAATAAGTTGGGAATCTCTCGAAGGTGAAATCGCTTC 829
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 762 GATCAACGTTGAAGACGTGCAGAGAATAGGTTGGGAATCTCTCGAAGGTGAAATCGCTTC 821
Query 830 TTGGATCTCAATCGTTCGCCGTTGCTCCACCGTGCTTTTCCCCGGCGAGCTTTCTTTATG 889
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 822 GTGGATCTCAATCGTTCGCCGTTGCTCCACCGTGCTTTTCCCCGGCGAGCTTTCTCTCTG 881
Query 890 CAATGCGGTCTTTCCGGATCAAGATCATGCCTCTATTCGTAAACGCCTATTCACCGGTTT 949
|| || ||||||||||||||||||||| ||||| | |||||||| || |||||||||||
Sbjct 882 TAACGCCGTCTTTCCGGATCAAGATCATTCCTCTGTCCGTAAACGTCTTTTCACCGGTTT 941
Query 950 GGTCTCTGCTGTTACAATCCGGTTTCTTGATTTCTCTGGTGCGGTGGTGCTGACAAAACG 1009
|||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 942 GGTCTCCGCTGTTACAATCCGGTTTCTTGATTTCTCCGGTGCGGTGGTGCTGACGAAACG 1001
Query 1010 GTCGTCGGAGAAGCTCTTCAAGTTCTTAGACATGTACGAGACGCTTCGTGATTTGATTCC 1069
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1002 GTCGTCGGAGAAGCTTTTCAAGTTCTTAGACATGTACGAGACGCTTCGTGATTTGATTCC 1061
Query 1070 AGCGGTGGAACAATCTGATTCAGATTTGATCCAGGAGATTAAATTGGCTCAGACGAGGCT 1129
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 1062 TGCGGTGGAACAATCTGATTCAGATTTGATCCAGGAGATTAAACTGGCTCAGACGCGGCT 1121
Query 1130 AGGTGAAGCAGCAGTGACTATATTCGGAGAGCTTGAGAAGTCGATCAAGAGCGATAATGG 1189
||| |||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||
Sbjct 1122 AGGAGAAGCAGCAGTGACGATATTCGGAGAGCTAGAGAAGTCGATAAAGAGCGATAATGG 1181
Query 1190 AAGAACTCCGGTACCGAGCGGCGCGGTTCATCCATTAACACGTTACACCATGAACTACCT 1249
| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1182 ACGAACTCCGGTACCGAGCGGCGCAGTTCATCCATTAACACGTTACACCATGAACTACCT 1241
Query 1250 CAAGTACGCTTGTGAGTACAAAGAAACATTAGACCAAGTGTTCCAACACTATGAATCTAA 1309
||| |||||||||||||| |||||||||||||||||||||||||||||||||||| | ||
Sbjct 1242 CAAATACGCTTGTGAGTATAAAGAAACATTAGACCAAGTGTTCCAACACTATGAAGCGAA 1301
Query 1310 TCAAACAGATAACAAACCTGAACCAGAGACCAAACCAAAGCAGCAGCAACGAGAAGACGA 1369
|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 1302 TCAAACAGATAACAAACCTGAACCAGAGACCAAACCTAGGCAGCAGCAACGAGAAGACGA 1361
Query 1370 TGAAGAGTACAAAGTGTCAGCTTTTGCTAGACAAATGATAAGGGTGATGGAATTGCTTGA 1429
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1362 TGAAGAGTACAAAGTTTCAGCTTTCGCTAGACAAATGATAAGGGTGATGGAATTGCTTGA 1421
Query 1430 CGCAAATCTTGAGATCAAATCGAAACTGTACAGAGACCCATCACTGAGATACATATTCTT 1489
||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 1422 CGCAAATCTTGAGATCAAATCGAGACTGTACAGAGACCCATCACTGAGATTTATATTCTT 1481
Query 1490 GATGAATAATGGAAGATACATTCTT-CAGAAGATTAAAGGGTCGATAGAGATAAGGGACT 1548
|||||||||||||||||||||| || ||||||||||||||||| || ||||||||||| |
Sbjct 1482 GATGAATAATGGAAGATACATT-TTGCAGAAGATTAAAGGGTCTATCGAGATAAGGGATT 1540
Query 1549 TGATGGGACAGTCATGGACAAGGAAAAGATCGACGGAGCTGAGACAGTATCATAAGAGTT 1608
||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||
Sbjct 1541 TGATGGGACAGTCATGGACGAGGAAGAGATCTACGGAGCTGAGACAGTATCATAAGAGTT 1600
Query 1609 ACCAGAGAGAGACTTGGGGGAAAGTGTTGCAATGTATGAATCAAGAAGGGTTACAAGTGA 1668
|||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||||
Sbjct 1601 ACCAGAGAGAGACTTGGGGGAAAGTGTTACAGTGTATGAATCAAGAAGGGTTACAGGTGA 1660
Query 1669 ACGGGAAGGTGTCGAAGCCGGTTTTGAAGGAGAGGTTCAAGATTTTCAATACTATGTTCG 1728
||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct 1661 ACGGGAAGGTGTCGAAGCCGGTTTTGAAGGAGAGGTTTAAGATTTTCAATGCTATGTTCG 1720
Query 1729 ATGAGATTCACAAGACGCAGAGCACCTGGATTGTGAGTGATGAGCAGATGCAATCGGAGC 1788
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1721 ATGAGATTCACAAGACGCAGAGCACTTGGATTGTGAGTGATGAGCAGATGCAATCGGAGC 1780
Query 1789 TAAGGGTGTCGATCTCGGCGTTGGTGATTCCAGCATATCGGTCTTTCTTTGGGAGGTATA 1848
||||||||||||| ||| ||||||||||||| || |||||||||||||||||||||||||
Sbjct 1781 TAAGGGTGTCGATTTCGTCGTTGGTGATTCCGGCTTATCGGTCTTTCTTTGGGAGGTATA 1840
Query 1849 AGCAACATCTTGATTCAGGGAAGCAGACGGATAAGTATGTCAAGTATCAGCCTGAGGATA 1908
|||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 1841 AGCAACATCTTGATTCAGGGAAACAGACGGATAAGTATGTTAAGTATCAGCCTGAGGATA 1900
Query 1909 TTGAGTCTTTCATTGATGACTTGTTTGATGGCAACCCTACTTCTATGGCACGCAAGAGA 1967
|||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1901 TTGAATCTTTCATTGATGACTTGTTTGATGGCAACCCAACTTCTATGGCACGCAAGAGA 1959
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 98744472015
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5