BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg940781
Length=1413
Score E
Sequences producing significant alignments: (Bits) Value
AT5G13160.1 | Symbols: PBS1 | Protein kinase superfamily protei... 2346 0.0
AT3G24790.1 | Symbols: | Protein kinase superfamily protein | ... 198 1e-49
> AT5G13160.1 | Symbols: PBS1 | Protein kinase superfamily protein
| chr5:4176579-4179885 FORWARD LENGTH=1849
Length=1849
Score = 2346 bits (1270), Expect = 0.0
Identities = 1367/1413 (97%), Gaps = 9/1413 (1%)
Strand=Plus/Plus
Query 1 TTGGGAAAATTGAGT---GGAGGAGATGGGTTGTTTCTCGTGTTTTGATTCGAGTGATGA 57
||||||||||||||| ||||||||||||||||||||||||||||||||||| | |||
Sbjct 251 TTGGGAAAATTGAGTAAAGGAGGAGATGGGTTGTTTCTCGTGTTTTGATTCGA--G-TGA 307
Query 58 TGACGAGAAGCTGAATCCAGTTGTTGAATCT-A--ATGGTCAGAAGAAACAATCACAACC 114
||||||||||||||||||||||| ||||||| | |||||||||||||||||||||||||
Sbjct 308 TGACGAGAAGCTGAATCCAGTTGATGAATCTAATCATGGTCAGAAGAAACAATCACAACC 367
Query 115 GACAGTATCCAATAACATTTCTGGACTTCCTTCAGGTGGGGAGAAGCTTAGCTCAAAGAC 174
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 368 GACAGTATCCAATAACATATCTGGACTCCCTTCAGGTGGGGAGAAGCTTAGCTCAAAGAC 427
Query 175 CAATGGAGGATCAAAAAGGGAGCTACTGCTTCCAAGGGATGGGCTTGGACAAATTGCTGC 234
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 428 CAATGGAGGATCAAAAAGGGAGCTACTGCTTCCAAGGGATGGACTTGGACAAATTGCTGC 487
Query 235 TCATACATTTGCTTTCCGCGAGCTTGCTGCTGCAACTATGAACTTTCATCCTGACACTTT 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 488 TCATACATTTGCTTTCCGCGAGCTTGCTGCTGCAACTATGAACTTTCATCCTGACACTTT 547
Query 295 CTTAGGCGAAGGTGGATTTGGACGTGTCTACAAAGGAAGGCTTGACAGCACCGGTCAGGT 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 548 CTTAGGCGAAGGTGGATTTGGACGTGTCTACAAAGGAAGGCTTGACAGCACCGGTCAGGT 607
Query 355 TGTTGCTGTTAAACAACTGGACAGGAATGGTCTACAAGGTAACAGAGAATTTCTGGTAGA 414
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 608 TGTTGCTGTTAAACAACTAGACAGGAATGGTCTACAAGGTAACAGAGAATTTCTGGTAGA 667
Query 415 GGTTCTTATGCTCAGTCTTCTTCATCATCCCAACTTAGTCAACCTTATTGGTTATTGTGC 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 668 GGTTCTTATGCTCAGTCTTCTTCATCATCCCAACTTAGTCAACCTTATTGGTTATTGTGC 727
Query 475 TGATGGAGATCAACGCCTCTTAGTTTACGAGTTTATGCCGTTAGGATCATTGGAAGATCA 534
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 728 TGATGGAGATCAACGCCTCTTGGTCTACGAGTTTATGCCGTTAGGATCATTGGAAGATCA 787
Query 535 CCTCCACGATCTTCCACCGGATAAGGAGGCCTTAGATTGGAACATGAGAATGAAAATAGC 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 788 CCTCCACGATCTTCCACCGGATAAGGAGGCCTTAGATTGGAACATGAGAATGAAAATAGC 847
Query 595 TGCTGGTGCGGCGAAAGGATTGGAATTTCTACATGATAAGGCAAACCCTCCGGTTATTTA 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 848 TGCTGGTGCGGCGAAAGGATTGGAATTTCTACATGATAAGGCAAACCCTCCGGTTATTTA 907
Query 655 TAGAGATTTTAAGTCATCAAACATTTTACTGGATGAGGGTTTCCACCCAAAACTTTCTGA 714
||||||||||||||||||||| |||||||||||||||||||||||||| || ||||||||
Sbjct 908 TAGAGATTTTAAGTCATCAAATATTTTACTGGATGAGGGTTTCCACCCTAAGCTTTCTGA 967
Query 715 TTTTGGGCTTGCTAAACTGGGACCAACGGGAGACAAATCTCATGTCTCCACTAGAGTTAT 774
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 968 TTTTGGACTTGCTAAACTCGGACCAACGGGAGACAAATCTCATGTCTCCACTAGAGTTAT 1027
Query 775 GGGAACTTATGGTTATTGTGCTCCCGAATACGCAATGACGGGACAATTGACAGTAAAATC 834
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1028 GGGAACTTATGGTTATTGTGCTCCCGAGTACGCAATGACGGGACAATTGACAGTAAAATC 1087
Query 835 AGATGTATACAGTTTTGGTGTGGTTTTTCTCGAGCTCATTACTGGTCGCAAAGCTATAGA 894
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1088 AGATGTCTACAGTTTTGGTGTGGTTTTTCTCGAGCTCATTACTGGTCGCAAAGCTATAGA 1147
Query 895 CAGCGAGATGCCTCATGGAGAGCAGAACCTGGTGGCTTGGGCTCGCCCATTGTTCAACGA 954
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1148 CAGCGAGATGCCTCATGGAGAGCAGAACCTGGTGGCTTGGGCTCGCCCATTGTTCAACGA 1207
Query 955 CAGGCGAAAGTTCATAAAACTGGCGGATCCAAGGTTAAAGGGGCGGTTTCCAATGCGTGC 1014
|||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 1208 CAGGCGAAAGTTCATAAAACTGGCTGATCCAAGGTTAAAGGGGCGGTTTCCAACGCGTGC 1267
Query 1015 ACTCTACCAAGCTTTAGCTGTGGCTTCAATGTGCATCCAAGAGCAGGCGGCTACACGTCC 1074
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 1268 ACTCTACCAAGCTTTAGCTGTGGCATCAATGTGCATCCAAGAACAGGCGGCTACACGTCC 1327
Query 1075 TCTCATAGCAGATGTTGTCACTGCACTCTCTTATCTTGCAAACCAAGGTTATGATCCAAG 1134
|||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||
Sbjct 1328 TCTCATAGCAGATGTTGTCACTGCACTCTCCTATCTTGCAAACCAAGCTTATGATCCAAG 1387
Query 1135 CAAAGATGACAGTAAAAGAAACCGAGATGAAAGAGGGGCGAGGTTAATAACAAGAAACGA 1194
|||||||| |||| ||||||||| ||||||||||| || |||||||||||||| |||||
Sbjct 1388 TAAAGATGATAGTAGAAGAAACCGGGATGAAAGAGGTGCAAGGTTAATAACAAGGAACGA 1447
Query 1195 CGATGGAGGTGGCTCGGGAAGTAAATTCGACCTAGAAGGTTCCGAGAAAGAAGATTCGCC 1254
|||||||||||||||||||||||||||||| |||||||||| |||||||||||||| ||
Sbjct 1448 CGATGGAGGTGGCTCGGGAAGTAAATTCGATTTAGAAGGTTCAGAGAAAGAAGATTCACC 1507
Query 1255 AAGAGAGACAGCTCGGATATTGAACCGAGATATCAACAGGGAGCGTGCAGTTGCAGAGGC 1314
||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 1508 GAGAGAGACAGCTCGGATATTGAACCGAGATATCAATAGGGAGCGTGCGGTTGCAGAGGC 1567
Query 1315 TAAAATGTGGGGGGAGAGTTTGAGGGAGAAACGAAGACAGAGCGAGCAGGGTACTTCAGA 1374
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1568 TAAGATGTGGGGAGAGAGTTTGAGGGAGAAACGAAGACAGAGCGAGCAGGGTACTTCAGA 1627
Query 1375 GAGCAACAGTACCGGGTAGAACCGGTTTGAGTC 1407
||||||||||||||||||||||||||||| |||
Sbjct 1628 GAGCAACAGTACCGGGTAGAACCGGTTTGGGTC 1660
> AT3G24790.1 | Symbols: | Protein kinase superfamily protein
| chr3:9052982-9054531 FORWARD LENGTH=1106
Length=1106
Score = 198 bits (107), Expect = 1e-49
Identities = 426/574 (74%), Gaps = 46/574 (8%)
Strand=Plus/Plus
Query 302 GAAGGTGGATT-TGGACGTGTCTACAAAGGAAGGCTTG-ACAGCACCGGTCAGGTTGTTG 359
|||||||| || ||| | || |||||||||| ||||| | | | | | |||||| || |
Sbjct 177 GAAGGTGGGTTCGGGA-GGGTTTACAAAGGAAAGCTTGAAAATC-CAGCTCAGGTCGTGG 234
Query 360 CTGTTAAACAACTGGACAGGAATGG-TCTACAAGGTAACAGAGA-ATTTC-TGGTAGAGG 416
| || |||||||| || |||||||| | ||||||| ||| ||| | ||| |||| ||||
Sbjct 235 CAGTGAAACAACTTGATAGGAATGGAT-TACAAGG--ACAAAGAGAGTTCTTGGTCGAGG 291
Query 417 TTCTT-ATGCTCAGTCTTCTTCATCATCCCAA-CTTAGTCAACCTTATTGGTTATTGTGC 474
|||| ||||| |||||||| |||||| || ||| || || ||||| |||||||| ||
Sbjct 292 -TCTTAATGCTTAGTCTTCTACATCATAGGAATCTT-GTGAATCTTATCGGTTATTGCGC 349
Query 475 TGATGGAGATCAACG-CCTCTTAGTTTACGAGTTTATGCCGT-TAGGATCAT-TGGAAGA 531
||||||||| ||| | | |||| |||||||||| |||||| | | ||||| | | |||||
Sbjct 350 TGATGGAGACCAAAGACTTCTT-GTTTACGAGTATATGCC-TCTTGGATC-TCTAGAAGA 406
Query 532 TCACCTCCACGATCTTCCACC-GGATAAGGAGGCC-TTAGATTGGAACA-TGAGAATGAA 588
||| |||| ||||||| ||| ||| || | || |||| ||||||| | | || ||
Sbjct 407 TCATCTCCTCGATCTTGAACCGGGACAA--AAACCACTAGACTGGAACACT-CGTATTAA 463
Query 589 AATAGCTGCT-GGTGCGGCGAAAGG-ATTGGAATTTCTACATGATAAGGCAAACCCTCCG 646
|| ||| | || || || ||||| ||| || | ||| |||||| |||| | |||||
Sbjct 464 GATTGCT-TTAGGAGCAGCAAAAGGAATT-GAGTATCTCCATGATGAGGCTGATCCTCCA 521
Query 647 GTTATTTATAGAGATTTTAAGTCATCAAACATTTTACTGGA-TGAGGGTTTCCACCCAAA 705
|| ||||| ||||| |||| || ||||| || ||||| || | | | | | ||
Sbjct 522 GTGATTTACCGAGATCTTAAATCGTCAAATATATTACTTGACCCA-GAATACGTTGCGAA 580
Query 706 ACTT-TCTGATTTTGGGCTT-GCTAAA-CTGGGACCAACGGGAGACAAATCT-CATGTCT 761
| || || || ||| || || || ||| || || || ||||||| | || ||||| |
Sbjct 581 A-TTATCGGA-TTTCGGTTTAGC-AAAGCTAGGTCCTGTTGGAGACACA-CTACATGTGT 636
Query 762 CCACTAGAGTTATGGGAACTTATGGTTATTGTGCTCCCGAATACGCAATGA-CGGGACAA 820
| | ||||||||||||||||||||||||||||||| ||||| ||| || | || | |
Sbjct 637 CTTCCCGAGTTATGGGAACTTATGGTTATTGTGCTCCTGAATAT-CAAAGAACTGG-CTA 694
Query 821 T-TGACAG-TAAAATCAGATGTATACAGTTTTGG 852
| | ||| |||| |||||||| ||||| |||||
Sbjct 695 TCTAACAAATAAA-TCAGATGTCTACAGCTTTGG 727
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69628155915
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5