BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg940784
Length=812
Score E
Sequences producing significant alignments: (Bits) Value
AT5G13180.1 | Symbols: ANAC083, VNI2, NAC083 | NAC domain conta... 1356 0.0
AT1G62700.1 | Symbols: VND5, ANAC026 | Arabidopsis NAC domain c... 65.8 6e-10
> AT5G13180.1 | Symbols: ANAC083, VNI2, NAC083 | NAC domain containing
protein 83 | chr5:4196572-4197848 FORWARD LENGTH=1101
Length=1101
Score = 1356 bits (734), Expect = 0.0
Identities = 789/815 (97%), Gaps = 5/815 (1%)
Strand=Plus/Plus
Query 1 TCTCTCTCCTTTTGTTTGG-A--ACCATGGATAATGTTAAACTTGTTAAGAATGGTGTTT 57
||||||| | ||||||||| | |||||||||||||| ||||||||||||||||||||||
Sbjct 48 TCTCTCT-C-TTTGTTTGGAACCACCATGGATAATGTCAAACTTGTTAAGAATGGTGTTT 105
Query 58 TGAGATTGCCACCTGGATTCAGATTTCATCCTACTGATGAAGAACTTGTTGTTCAATACC 117
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 106 TGAGATTGCCACCTGGATTCAGATTCCATCCTACTGATGAAGAACTTGTGGTTCAATACC 165
Query 118 TTAAGAGGAAAGTCTGTTCTTCTCCTTTGCCAGCTTCAATCATCCCTGAGTTTGATGTTT 177
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 166 TTAAGAGGAAAGTTTGTTCTTCTCCTTTGCCAGCTTCAATCATCCCTGAGTTTGATGTTT 225
Query 178 GCAGAGCTGATCCTTGGGATTTACCTGGCAATTTGGAGAAGGAGAGGTACTTCTTTAGCA 237
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 226 GCAGAGCTGATCCTTGGGATTTACCTGGCAATTTGGAGAAAGAGAGGTACTTCTTTAGCA 285
Query 238 CAAGGGAAGCTAAGTACCCAAATGGGAACCGGTCTAACCGGGCAACTGGGTCTGGTTATT 297
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 286 CAAGGGAAGCTAAATACCCAAATGGGAACCGGTCTAACCGGGCAACTGGGTCTGGTTATT 345
Query 298 GGAAAGCTACCGGTATTGATAAACGGGTTGTGACCTCTAGAGGAAATCAAATCGTTGGTT 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 346 GGAAAGCTACCGGTATTGATAAACGGGTTGTGACCTCTAGAGGAAATCAAATCGTTGGTT 405
Query 358 TGAAGAAAACTCTTGTCTTCTACAAGGGCAAACCACCTCATGGCTCAAGAACCGATTGGA 417
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 406 TGAAGAAAACTCTTGTCTTCTACAAAGGCAAACCACCTCATGGCTCAAGAACCGATTGGA 465
Query 418 TCATGCACGAATATCGCCTCTCTTCTTCTCCTCCGAGTTCTATGGGTCCCACTCAGAACT 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 466 TCATGCACGAATATCGCCTCTCTTCTTCTCCTCCGAGTTCTATGGGTCCCACTCAGAACT 525
Query 478 GGGTTCTCTGTCGTATCTTCTTGAAGAAAAGAGCCGGAAACAAGAACGACGACGACGACG 537
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 526 GGGTACTCTGTCGTATCTTCTTGAAGAAAAGAGCCGGTAACAAGAACGACGACGACGACG 585
Query 538 GAGATAGCCGGAATCTTAGACATATTAATAATAATAATTCGAGTGACCAAATTGATATAA 597
|||||||||| ||||||||||||| ||||||||| |||||||||||||||||||| ||||
Sbjct 586 GAGATAGCCGTAATCTTAGACATAATAATAATAACAATTCGAGTGACCAAATTGAGATAA 645
Query 598 TTACAACAAACCAAACAGATGATAAAACAAAACCAATCTTCTTCGATTTCATGAGAAAAG 657
|||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 646 TTACAACAGACCAAACAGATGATAAAACAAAACCAATCTTCTTTGATTTCATGAGAAAAG 705
Query 658 AAAGGACTACAGATTTGAACCTTTTGCCTAGCTCCCCTTCTTCCGATCATGCTTCAAGTG 717
|||| || |||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 706 AAAGAACAACAGATTTGAACCTTTTGCCGAGCTCTCCTTCTTCCGATCATGCTTCAAGTG 765
Query 718 GAGTCACGACGGAGATCTTCTCTTCTTCCGATGAAGAGACCAGTAGTTGCAATAGTTTCA 777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 766 GAGTCACGACGGAGATCTTCTCTTCTTCCGATGAAGAGACCAGTAGTTGCAATAGTTTCA 825
Query 778 GAAGAAATCTTTAATTTAATTTTCATGTTGACTAT 812
|| |||||||||||||||||||| |||||||||||
Sbjct 826 GATGAAATCTTTAATTTAATTTTAATGTTGACTAT 860
> AT1G62700.1 | Symbols: VND5, ANAC026 | Arabidopsis NAC domain
containing protein 26 | chr1:23216218-23217916 REVERSE LENGTH=1185
Length=1185
Score = 65.8 bits (35), Expect = 6e-10
Identities = 37/38 (97%), Gaps = 0/38 (0%)
Strand=Plus/Plus
Query 69 CCTGGATTCAGATTTCATCCTACTGATGAAGAACTTGT 106
||||| ||||||||||||||||||||||||||||||||
Sbjct 25 CCTGGCTTCAGATTTCATCCTACTGATGAAGAACTTGT 62
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39534273689
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5