BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg940786
Length=904
Score E
Sequences producing significant alignments: (Bits) Value
AT5G13200.1 | Symbols: | GRAM domain family protein | chr5:420... 1138 0.0
> AT5G13200.1 | Symbols: | GRAM domain family protein | chr5:4207004-4208289
FORWARD LENGTH=1106
Length=1106
Score = 1138 bits (616), Expect = 0.0
Identities = 776/848 (92%), Gaps = 31/848 (4%)
Strand=Plus/Plus
Query 2 AATTCAGAAAATTTCAGACATGACAGGATCGCAAGGAGAAGAGACTCACCAACCTAAG-- 59
||||||||||||||||| |||||||||||| | | || | || |||||||||||
Sbjct 59 AATTCAGAAAATTTCAGCCATGACAGGATCAC-A--AG-A-AG----ACCAACCTAAGAT 109
Query 60 -ATCGTTGATCAAGAACAACCTAAAACTGTAGAAACAGAGCACCAACCACAGCCACAACC 118
||| |||||||||| ||||| |||||| ||||||||||| || | |||||
Sbjct 110 CATCATTGATCAAGAGCAACCCAAAACTCTAGAAACAGAG---------CA--C-CAACC 157
Query 119 AGAACCTTCTTCATCGTCTCCGGATCAGAAGAAATGGGGGACTCACGTGATGGGAGCTCC 178
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 158 AGAACCTTCTTCATCGTCTCCGGATCAGAAGAAATGGGGTACTCACGTGATGGGAGCTCC 217
Query 179 GGCAGCTCCCGTGGCTCATCCCGATAACCAACAGGCGGCGGCGTGGGTCGCCGGAGATAA 238
||||||||| || |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 218 GGCAGCTCCAGTTGCTCATCCCGATAACCAACAGGCGGCGGCGTGGGTCGCTGGAGATAA 277
Query 239 CCAGCAGACGCAGTATCAACCGTACGTCATCTACTCTCCTGTCGAACAT-C-A-TACTAA 295
||||||||||||||| ||||||||||||||||||||||||||||||||| | | |||||
Sbjct 278 CCAGCAGACGCAGTACCAACCGTACGTCATCTACTCTCCTGTCGAACATCCAACAACTAA 337
Query 296 CAACCCTCTTGAACCCGTCATCGGAATGTTCCATACCTGGAGTCGCAAGGCTGAAACCGT 355
||||||||| || || ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 338 CAACCCTCTCGAGCCAGTCATCGGAATGTTCCATACCTGGAGTCGCAAGGCAGAAACCGT 397
Query 356 CGCCCGTAACCTCTGGCACAATCTGAAAACAGGGCCGTCTATGTCGGAAACAGCCTGGGG 415
||| ||||||||||||||||||||||| ||||| ||||||||||||||||| || |||||
Sbjct 398 CGCACGTAACCTCTGGCACAATCTGAAGACAGGACCGTCTATGTCGGAAACGGCGTGGGG 457
Query 416 AAAGGTTAATCTGACGGCGAAAGCGATAACAAAAGGAGGATTCGAGTCGCTTTTCATACA 475
||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 458 GAAGGTTAATTTGACGGCCAAAGCGATAACAAAAGGAGGATTCGAGTCGCTTTTCAGACA 517
Query 476 GATTTTTGGAACAGAGCCAAACGAGAAGCTGAAGAAAACTTTCGCTTGTTATCTCTCAAC 535
|||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct 518 GATTTTCGGAACAGAGCCAAACGAGACGCTGAAGAAAACTTTCGCTTGTTATCTCTCGAC 577
Query 536 TACGACAGGTCCTGTCGCTGGAACTCTGTATCTTTCGAATGCTCGCGTCGCGTTTTGTAG 595
|||||||||||||| ||||||||| | ||||||||||||||||| ||||| ||||||||
Sbjct 578 GACGACAGGTCCTGTTGCTGGAACTGTCTATCTTTCGAATGCTCGTGTCGCTTTTTGTAG 637
Query 596 CGATCGTCCTCTGTACTTCACAGCACCTTCTGGTCAAGAATCTTGGAGCTACTACAGGGT 655
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 638 CGATCGTCCTCTGTACTTCACAGCACCTTCTGGTCAAGAATCTTGGAGCTACTACAGGGT 697
Query 656 GG-TGATACCTTTGG-GAAATGTTGCGACGGTAAATCCGGTGGTGGTGAAAGAGACTCCG 713
|| || ||||||||| | ||||| |||||||| ||||||||||||||||||||||||||
Sbjct 698 GGTTG-TACCTTTGGCG-AATGTAGCGACGGTGAATCCGGTGGTGGTGAAAGAGACTCCA 755
Query 714 CCTGAGAAGTATATTCAGGTGTCGACGGTGGATGGTCATGACTTCTGGTTCATGGGTTTT 773
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 756 CCTGAGAAGTATATTCAGTTGACGACGGTGGATGGTCATGACTTCTGGTTCATGGGTTTT 815
Query 774 GTGAATTATGAGAAGGCTACGCATCATCTGCTGACCAGTGTCTCGGATTCTCAAACCGCA 833
|||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct 816 GTGAATTATGAGAAGGCTACGCATCATCTGCTGACCAGTGTCTCCGATTTTCAAACCGCA 875
Query 834 CACGGCTC 841
||||||||
Sbjct 876 CACGGCTC 883
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44155815213
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5