BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg940791
Length=892
Score E
Sequences producing significant alignments: (Bits) Value
AT5G13250.1 | Symbols: | RING finger protein | chr5:4234269-42... 1354 0.0
> AT5G13250.1 | Symbols: | RING finger protein | chr5:4234269-4241746
FORWARD LENGTH=1512
Length=1512
Score = 1354 bits (733), Expect = 0.0
Identities = 840/889 (94%), Gaps = 17/889 (2%)
Strand=Plus/Plus
Query 1 TCCGGTCACCGGATTCTGCCATGGTTTCTGCTGCTGAATCCTCTTCCTCCTCGTCAACGC 60
||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 198 TCCGGTCACCGGACTCTGCCATGGTTTCTGCTGCTGAATCCTCTTCCTCCACGTCAACGC 257
Query 61 TTCTTCTTCCATGTGCATTTGCCAACAGTTTTGCTTTTATGAGGTTATTACAAAAAGCTC 120
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct 258 TTCTTCTTCCATGTGCGTTTGCCAACAGTTTTGCTTTTATGAGGTTATTACAAAAAACTC 317
Query 121 ATCACTTCGCTGCCGTCTCTGAGGACGACGACAACAACAAAGCA-ATTCGCTTAGGATCT 179
|||||||| ||||||||||||||||||||||||||||||||| | |||| ||||||||||
Sbjct 318 ATCACTTCTCTGCCGTCTCTGAGGACGACGACAACAACAAAG-ACATTCACTTAGGATCT 376
Query 180 G---ATCATCAGGCAAAAGATAATAACCATCACCAAGTTTGTAGGAGAGATTGTAGTTTC 236
| |||||||||||||||||||||| ||||||||||||| ||||||||| |||||||||
Sbjct 377 GATCATCATCAGGCAAAAGATAATAATCATCACCAAGTTTTTAGGAGAGAGTGTAGTTTC 436
Query 237 ATGGCCGATCAAGAAGAGCCGAGGAGTACTACTTCTAGGTTAAGCTCCAAGGACGACGAC 296
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 437 ATGGCCGATCAAGAAGAGCCGAGGAGTACTACTTCTAGGTTAAGCTCCAAGGAGGACGAC 496
Query 297 CACGACAACAATAGCaataataataata--a-taataaCAACAACAACGAAGCCGAAGAT 353
|||||||||||||||||||| || |||| | |||||| |||||||||||||||||||||
Sbjct 497 CACGACAACAATAGCAATAACAACAATATTAATAATAATAACAACAACGAAGCCGAAGAT 556
Query 354 CATGAGATGAGACAACAAGGGTGGCTCCGGTTAAGCATAGGCCACGAGGAGGACGTTAAA 413
|||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct 557 CATGAGATGAGACAACAAGGGTGGCTCCGGTTAAGCTTAGGTCACGAGGAGGACGTTAAA 616
Query 414 CCGGATCTCGACCATCGGCAGCAACATCAAACCGATCCAACGGCTAGGAGAGACTCTTTT 473
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 617 CCGGATCTCGACCATCGGCAGCAACATCAAACTGATCCAACGGCTAGGAGAGACTCTTTT 676
Query 474 CTAGAGCTTAACCTTTTCTCTGGCGGTTTAAATAAAGAAGAAGAAGTTGGTCTTCCATTG 533
|||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 677 CTAGAGCTTAACCTTTCCTCTGGCGGTTCAAATAGAGAAGAAGAAGTTGGTCTTCCATTG 736
Query 534 TCATCTCTCTTTCATCATCAGCATCAACCCGGAGGGATGATGATTAATCCATTGATGTTC 593
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 737 TCATCTCTCTTTCATCATCAGCATCAAGCCGGAGGGATGATGATTAATCCATTGATGTTC 796
Query 594 CATAACA-GGCCTCAGGATATGATTGGTCCTTGGGCGGCCGCTGCGTTTAGAACGCCTTT 652
|||| || ||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 797 CATA-CAAGGCCTCAGGATATGATTGGTCCTTGGGCGGCGGCTGCGTTTAGAACGCCTTT 855
Query 653 TGTCCCACAAAACCTAACACAACCATCATCATCATC-T--GCTTCTTTGATGATGCCACT 709
|||||||||||||||||||||||||||||||||||| | | |||||||||||||||| |
Sbjct 856 TGTCCCACAAAACCTAACACAACCATCATCATCATCATCTGGTTCTTTGATGATGCCATT 915
Query 710 GATGGGACCA-TACTTTGGCCGCTCCAGTTTTCAGCCGCAGTTATTAGGGAATGATAATC 768
|||||||| | |||||||| ||||| |||||||||||||||||| ||||||||||||| |
Sbjct 916 GATGGGAC-AGTACTTTGGTCGCTCTAGTTTTCAGCCGCAGTTAATAGGGAATGATAACC 974
Query 769 CGGATGTGGTGGCCGGTCCAAGCTCGAGTTTTCGAGTCATTGATCCTCCCAGACGGCCCC 828
|||||| |||||| ||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct 975 CGGATGGGGTGGCAGGTCCAAGCTCGAGTTTAAGAGTCATTGATCCTCCCAGACGACCCC 1034
Query 829 ATTCCGGCATTTGGTTTCTCCTTCAAGCTTCTCAAAACCAGTA-AGTAG 876
||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 1035 ATTCCGGCATTTGGTTTCTCCTTCAAGCTTCTCAAAACCAG-ACAGTAG 1082
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43553005449
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5