BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg940794
Length=1755
Score E
Sequences producing significant alignments: (Bits) Value
AT5G13280.1 | Symbols: AK-LYS1, AK1, AK | aspartate kinase 1 | ... 2867 0.0
> AT5G13280.1 | Symbols: AK-LYS1, AK1, AK | aspartate kinase 1
| chr5:4249438-4252836 FORWARD LENGTH=1970
Length=1970
Score = 2867 bits (1552), Expect = 0.0
Identities = 1697/1764 (96%), Gaps = 21/1764 (1%)
Strand=Plus/Plus
Query 1 TTCTTCTTCTTCCTCTTCTCCAATGGCGGCTACTAGGGTTCGGTGTTGTCATAGCAATGC 60
||||||||||||||| |||| ||||||||||||||||||||| |||||||||||||||||
Sbjct 57 TTCTTCTTCTTCCTCCTCTCAAATGGCGGCTACTAGGGTTCGTTGTTGTCATAGCAATGC 116
Query 61 ACCTTTCACCAGATTGCC-TTATACCCGCCACCGAAACTCGCCGACGCCACCGATTTCTC 119
| |||||||||||||||| | |||||||||||||||||||||||||| |||||||||||
Sbjct 117 AGCTTTCACCAGATTGCCACT-TACCCGCCACCGAAACTCGCCGACGCTACCGATTTCTC 175
Query 120 TGAATCGTGTCGATTTCTCTGCGCTGAAGTGCTCGAGGAGATTATCATTACCCATTGGAG 179
| ||||||||||||||| || ||||||| || | ||||||||||||||||||||
Sbjct 176 TAAATCGTGTCGATTTCCCTACGCTGAA------GA--A-ATTATCATTACCCATTGGAG 226
Query 180 ATGGCTCCTCCATTAGAAAGGTTTCAGGTTCACGCTGCAGAAACATTGTGCGAGCTGTGT 239
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 227 ATGGCTCCTCCATTAGAAAGGTTTCAGGTTCAGGCAGCAGAAACATTGTGCGAGCTGTGT 286
Query 240 TGG-A-AG-AGAAGACAGAGGC-ATTAACGGAGGTAGATGATAAGGGAT-TCTCGTGCGT 294
||| | || ||||||||||||| | |||||||||||||||| ||||| | || |||||||
Sbjct 287 TGGAAGAGAAGAAGACAGAGGCGA-TAACGGAGGTAGATGAGAAGGG-TATCACGTGCGT 344
Query 295 GATGAAGTTTGGTGGATCTTCGGTGGCGTCAGCTGAGAGAATGAAGGAAGTTGCGGATTT 354
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 345 GATGAAGTTTGGTGGATCTTCGGTGGCGTCAGCTGAGAGAATGAAGGAAGTTGCTGATTT 404
Query 355 GATTTTGACTTTTCCGGAAGAAAGTCCCGTCATTGTTCTCTCTGCAATGGGGAAAACTAC 414
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 405 GATTTTGACTTTTCCGGAAGAAAGTCCCGTCATTGTTCTCTCTGCTATGGGGAAAACTAC 464
Query 415 CAACAATCTCTTGCTTGCGGGAGAGAAGGCGGTGAGTTGTGGTGTTTCTAATGCATCTGA 474
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 465 CAACAATCTCTTGCTTGCGGGAGAGAAGGCGGTTAGTTGTGGTGTTTCTAATGCATCTGA 524
Query 475 GATTGAGGAATTGAGCATTATAAAGGAATTGCATATCAGGACGGTGAAAGAGCTCAACAT 534
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 525 GATTGAGGAGTTGAGCATTATAAAGGAATTGCATATCAGGACGGTGAAAGAGCTCAACAT 584
Query 535 TGATCCCTCTGTTATTTTGACCTATTTGGAAGAACTGGAGCAACTCCTGAAAGGCATTGC 594
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 585 TGATCCCTCTGTTATTTTGACCTATTTGGAGGAACTGGAGCAACTCCTGAAAGGCATTGC 644
Query 595 CATGATGAAGGAGTTGACACTTCGTACCAGAGACTACTTGGTCTCTTTTGGAGAGTGCTT 654
|||||||||||| ||||||||||| |||||||| ||||| ||||||||||||||||| ||
Sbjct 645 CATGATGAAGGAATTGACACTTCGAACCAGAGATTACTTAGTCTCTTTTGGAGAGTGTTT 704
Query 655 GTCAACAAGGATTTTCGCTGCTTATCTTAATACAATCGGTGTCAAGGCACGCCAATATGA 714
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 705 GTCTACAAGGATTTTTGCTGCTTATCTTAATACAATCGGTGTCAAGGCACGCCAATATGA 764
Query 715 TGCATTTGAAATTGGTTTCATTACAACGGATGATTTCACAAATGGGGATATCCTGGAGGC 774
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 765 TGCATTTGAAATTGGTTTCATTACAACGGATGATTTCACAAATGGGGATATCCTGGAGGC 824
Query 775 AACTTATCCAGCCGTTGCCAAGAGATTATATGATGATTGGGTGCATGATCCCGCTGTTCC 834
|||||||||||| ||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct 825 AACTTATCCAGCTGTTGCCAAGAGATTATATGATGATTGGATGCATGATCCTGCTGTTCC 884
Query 835 TATTGTAACAGGTTTCCTCGGGAAGGGTTGGAAAACAGGTGCGGTTACTACCTTGGGTAG 894
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 885 TATTGTAACAGGTTTCCTTGGGAAGGGTTGGAAAACTGGTGCGGTTACTACCTTGGGTAG 944
Query 895 GGGTGGCAGTGATTTGACGGCAACCACAATTGGTAAAGCATTGGGTTTGAAAGAGATTCA 954
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 945 GGGTGGCAGTGATTTGACGGCAACCACAATTGGTAAAGCGTTGGGTTTGAAAGAGATTCA 1004
Query 955 GGTGTGGAAAGATGTCGATGGTGTTCTAACATGTGACCCTACTATATATAAGCAAGCTAC 1014
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1005 GGTGTGGAAAGATGTCGATGGTGTTCTAACATGTGACCCTACTATATATAAGCGAGCTAC 1064
Query 1015 ACCAGTACCATTTCTGACATTCGACGAAGCAGCCGAGCTAGCTTATTTTGGTGCACAGGT 1074
||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1065 ACCAGTACCATATCTGACATTTGACGAAGCAGCCGAGCTAGCTTATTTTGGTGCACAGGT 1124
Query 1075 CTTGCACCCACAGTCAATGAGACCAGCAAGAGAGGGTGAGATTCCTGTTAGGGTTAAAAA 1134
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1125 CTTGCACCCACAGTCAATGAGACCAGCAAGAGAGGGTGAGATTCCTGTTAGGGTTAAAAA 1184
Query 1135 TTCTTATAACCCTAAGGCTCCTGGAACTATCATCACTAAAACAAGAGACATGACCAAGAG 1194
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 TTCTTATAACCCTAAGGCTCCTGGAACTATCATCACTAAAACAAGAGACATGACCAAGAG 1244
Query 1195 CATTCTAACGAGCATTGTTCTGAAACGCAATGTGACCATGCTGGATATAGCAAGCACCCG 1254
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1245 TATTCTAACGAGCATTGTTCTGAAACGTAATGTGACCATGCTGGATATAGCAAGCACCCG 1304
Query 1255 AATGCTTGGTCAAGTTGGTTTTCTTGCAAAGGTATTCTCGATATTTGAGGAGCTTGGCAT 1314
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1305 AATGCTTGGTCAAGTTGGCTTTCTTGCAAAGGTATTCTCGATATTTGAGGAGCTTGGCAT 1364
Query 1315 TTCCGTAGATGTTGTTGCCACTAGTGAAGTCAGTATATCTCTGACACTGGACCCTTCAAA 1374
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1365 TTCCGTAGATGTTGTTGCCACTAGTGAAGTCAGTATATCTCTGACACTGGATCCTTCAAA 1424
Query 1375 ACTTTGGAGCAGGGAACTGATTCAACAGGAGCTTGATCATGTAGTTGAAGAACTGGAGAA 1434
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1425 ACTTTGGAGCAGAGAACTGATTCAACAGGAGCTTGATCATGTAGTTGAAGAACTGGAGAA 1484
Query 1435 AATTGCAGTTGTGAATCTTCTAAAAGGAAGAGCAATCATCTCTCTAATTGGGAATGTGCA 1494
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1485 AATTGCAGTTGTGAATCTTCTAAAAGGAAGAGCAATCATCTCTCTAATTGGGAATGTTCA 1544
Query 1495 ACATTCCTCCCTGATTTTAGAGAGGGCGTTTCATGTTCTTTATACCAAAGGTGTCAATGT 1554
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1545 ACATTCCTCCCTGATTTTAGAGAGGGCGTTTCATGTTCTTTATACCAAAGGTGTCAATGT 1604
Query 1555 CCAGATGATATCACAAGGAGCATCCAAGGTAAACATTTCCTTTATAGTAAACGAAGCTGA 1614
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1605 CCAGATGATATCACAAGGAGCATCCAAGGTAAACATTTCCTTTATAGTAAACGAAGCTGA 1664
Query 1615 AGCTGAAGGATGCGTTCAGGCTCTTCACAAATCCTTCTTTGAGAGCGGTGACCTCTCAGA 1674
||||||||| || |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1665 AGCTGAAGGTTGTGTTCAGGCTCTTCACAAATCCTTCTTCGAGAGCGGTGACCTCTCAGA 1724
Query 1675 GTTATTAATACAACCCAGACTTGGCAACGGGTCACCTGTGAGGA---TGCAAGTAGAAAA 1731
|||||| |||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct 1725 GTTATTGATACAACCCAGACTTGGCAACGGGTCACCTGTCAGGACACTGCAAGTAGAAAA 1784
Query 1732 TTGACTCGACAAGCTCATTGCTTG 1755
||||||||||||||| ||||||||
Sbjct 1785 TTGACTCGACAAGCTTATTGCTTG 1808
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86796742305
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5