BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg940809
Length=862
Score E
Sequences producing significant alignments: (Bits) Value
AT5G13430.1 | Symbols: | Ubiquinol-cytochrome C reductase iron... 1339 0.0
AT5G13440.1 | Symbols: | Ubiquinol-cytochrome C reductase iron... 1179 0.0
> AT5G13430.1 | Symbols: | Ubiquinol-cytochrome C reductase iron-sulfur
subunit | chr5:4305125-4307513 REVERSE LENGTH=1222
Length=1222
Score = 1339 bits (725), Expect = 0.0
Identities = 813/856 (95%), Gaps = 3/856 (0%)
Strand=Plus/Plus
Query 1 TAGATTCACA-TTGAGC--AGAGATGCTGCGTGTAGCAGGGAGGAGGCTTTTCTCTGTTT 57
|||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct 92 TAGATTCACATTTGAGCTGAGAGATGCTGCGTGTAGCAGGGAGGAGGCTTTTCTCTGTCT 151
Query 58 CCCAGAGATCTTCGTCTGCGACCTCCTTCGTCGTCTCCCGTGACCATTCCCTTTCCGATG 117
| |||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 152 CGCAGAGATCTTCGACTGCGACCTCCTTCGTCGTCTCCCGTGACCATACCCTTTCCGATG 211
Query 118 CCGGCGGCGACTCCTCTTCAGCTCCCAGATCCGTCCCCTCTGCAGATCTCTCATCTTACC 177
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 212 GTGGCGGCGACTCCTCTTCAGCTCCCAGATCCCTCCCCTCTGCAGATCTCTCATCTTACC 271
Query 178 ACCGGAGCCTTATTAGAGGTTTCGCTTCTCAAGTCCTTACTCAAGGAAATGAGATAGGTT 237
|||| |||||||| ||||| ||| |||||||||||||| |||||||||||||||||||||
Sbjct 272 ACCGTAGCCTTATCAGAGGCTTCTCTTCTCAAGTCCTTGCTCAAGGAAATGAGATAGGTT 331
Query 238 TTGCTTCGGAAGTCCCAGCCACTGTCGAAGCTGTCAAAACACCTAACTCAAAGATTGTCT 297
||| ||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 332 TTGGTTCAGAAGTCCCAGCCACAGTCGAAGCTGTCAAAACGCCTAACTCAAAGATTGTCT 391
Query 298 ATGACGACCATAACCATGAGCGTTACCCGCCTGGTGACCCCAGCAAGCGTGCATTCGCCT 357
|||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 392 ATGATGACCATAACCATGAGCGTTACCCACCTGGTGACCCTAGCAAGCGTGCATTCGCCT 451
Query 358 ATTTTGTCTTGTCGGGTGGGAGGTTTGTTTATGCCTCTGTCATCCGCCTGCTTGTTTTGA 417
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 452 ATTTTGTCTTGTCGGGTGGGAGGTTTGTTTATGCCTCTGTCCTCCGCCTGCTTGTTTTGA 511
Query 418 AGCTTGTTGTGAGTATGTCCGCAAGTAAAGATGTCCTTGCTCTTGCATCCCTCGAGGTTG 477
||||| ||||||| ||||| |||||||||||||||||||| ||||||||||| |||||||
Sbjct 512 AGCTTATTGTGAGCATGTCTGCAAGTAAAGATGTCCTTGCCCTTGCATCCCTTGAGGTTG 571
Query 478 ACCTAGGGAGCATTGAACCAGGAACTACTGTTACAGTCAAGTGGCGTGGAAAGCCAGTCT 537
||||||||||||| |||||||||||||| || ||||||||||||||||||||||| ||||
Sbjct 572 ACCTAGGGAGCATAGAACCAGGAACTACCGTGACAGTCAAGTGGCGTGGAAAGCCCGTCT 631
Query 538 TCATCAGGCGAAGAACAGAAGATGACATCAAGCTGGCCAATAGTGTGGATATCGGATCCC 597
|||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 632 TCATCAGGCGAAGAACAGAAGATGACATCAAGCTGGCCAATAGTGTGGATGTTGGATCCC 691
Query 598 TCAGGGACCCACAAGAAGACTCGGTTAGGGTCAAGAATCCAGAATGGTTAGTTGTGGTTG 657
| |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 692 TGAGGGACCCACAAGAAGACTCGGTTAGGGTCAAGAATCCAGAATGGTTAGTGGTTGTTG 751
Query 658 GAGTGTGCACTCATCTGGGATGCATCCCCTTGCCTAATGCTGGTGATTATGGCGGTTGGT 717
|||||||||||||| |||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 752 GAGTGTGCACTCATTTGGGGTGCATCCCCTTGCCTAATGCTGGTGATTATGGTGGTTGGT 811
Query 718 TTTGTCCGTGTCACGGATCACATTATGATATCTCTGGAAGAATTAGGAAAGGTCCTGCAC 777
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 812 TTTGTCCGTGTCACGGATCACATTACGATATATCTGGAAGAATTAGGAAAGGTCCTGCAC 871
Query 778 CATACAACCTGGAAGTACCAACCTACAGCTTCCTGGAAGAGAATAAGTTACTCATTGGTT 837
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 872 CATACAACCTGGAAGTACCAACCTACAGCTTCCTGGAAGAGAATAAGTTACTCATCGGTT 931
Query 838 GATTAATAAAAGCACA 853
||||||||||||||||
Sbjct 932 GATTAATAAAAGCACA 947
> AT5G13440.1 | Symbols: | Ubiquinol-cytochrome C reductase iron-sulfur
subunit | chr5:4308129-4310181 REVERSE LENGTH=1286
Length=1286
Score = 1179 bits (638), Expect = 0.0
Identities = 785/854 (92%), Gaps = 17/854 (2%)
Strand=Plus/Plus
Query 11 TTGAGCAGAGATGCTGCGTGTAGCAGGGAGGAGGCTTTTCTCTGTTTCCCAGAGATCTTC 70
|||||||||||||||||| |||||||| ||||||||||| |||||||| |||||||| ||
Sbjct 150 TTGAGCAGAGATGCTGCGAGTAGCAGGAAGGAGGCTTTTTTCTGTTTCGCAGAGATCATC 209
Query 71 GTCTGCGACCTCCTTCGTCGTCTCCCGTGACCATTCCCTTTCCGATGCCGGCGGCGACTC 130
| | ||||||||||||||| | |||||||||||| ||||||||||| || ||| ||||
Sbjct 210 GACGGCGACCTCCTTCGTCCTTTCCCGTGACCATACCCTTTCCGAT---GGAGGCAACTC 266
Query 131 CTCTTCAGCTCCCAGATCCGTCCCCTCTGCAGA----TC-TC--TC-A-TCTTACCACCG 181
|||||| ||| | ||||| |||||||||||||| || || || | |||||||||||
Sbjct 267 CTCTTCCGCTTCTAGATCTGTCCCCTCTGCAGATCTCTCATCTTTCAATTCTTACCACCG 326
Query 182 GAGCCTTATTAGAGGTTTCGCTTCTCAAGTCCTTACTCAAGGAAATGAGATAGGTTTTGC 241
|||| |||| |||||||| |||||||||||| ||||||| |||||||||||||||||||
Sbjct 327 GAGCGTTATAAGAGGTTTTGCTTCTCAAGTCATTACTCAGGGAAATGAGATAGGTTTTGG 386
Query 242 TTCGGAAGTCCCAGCCACTGTCGAAGCTGTCAAAACACCTAACTCAAAGATTGTCTATGA 301
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 387 TTCGGAAGTCCCAGCCACAGTCGAAGCTGTCAAAACACCTAACTCAAAGATTGTCTATGA 446
Query 302 CGACCATAACCATGAGCGTTACCCGCCTGGTGACCCCAGCAAGCGTGCATTCGCCTATTT 361
|||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||
Sbjct 447 CGACCATAACCATGAGCGTTACCCACCTGGTGACCCTAGCAAGCGGGCATTCGCCTATTT 506
Query 362 TGTCTTGTCGGGTGGGAGGTTTGTTTATGCCTCTGT-CATCCGCCTGCTTGTTTTGAAGC 420
||||||||||||||| |||||||||||||||||||| | |||||||||||||| ||||||
Sbjct 507 TGTCTTGTCGGGTGGAAGGTTTGTTTATGCCTCTGTTC-TCCGCCTGCTTGTTCTGAAGC 565
Query 421 TTGTTGTGAGTATGTCCGCAAGTAAAGATGTCCTTGCTCTTGCATCCCTCGAGGTTGACC 480
|| ||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 566 TTATTGTGAGCATGTCTGCAAGTAAAGATGTCCTTGCCCTTGCATCCCTCGAGGTTGACC 625
Query 481 TAGGGAGCATTGAACCAGGAACTACTGTTACAGTCAAGTGGCGTGGAAAGCCAGTCTTCA 540
|||||||||| |||||||||||||| || ||||||||||||||||||||||| |||||||
Sbjct 626 TAGGGAGCATAGAACCAGGAACTACCGTGACAGTCAAGTGGCGTGGAAAGCCCGTCTTCA 685
Query 541 TCAGGCGAAGAACAGAAGATGACATCAAGCTGGCCAATAGTGTGGATATCGGATCCCTCA 600
||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |
Sbjct 686 TCAGGCGAAGAACAGAAGATGACATCAAGCTGGCCAATAGTGTGGATGTTGGATCCCTGA 745
Query 601 GGGACCCACAAGAAGACTCGGTTAGGGTCAAGAATCCAGAATGGTTAGTT-GTGGTTGGA 659
||||||||||||||||||||||||| |||||||||||||||||||| | | |||||||||
Sbjct 746 GGGACCCACAAGAAGACTCGGTTAGAGTCAAGAATCCAGAATGGTT-GATCGTGGTTGGA 804
Query 660 GTGTGCACTCATCTGGGATGCATCCCCTTGCCTAATGCTGGTGATTATGGCGGTTGGTTT 719
|| ||||||||| |||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 805 GTATGCACTCATTTGGGGTGCATCCCCTTGCCTAATGCTGGTGATTATGGTGGTTGGTTT 864
Query 720 TGTCCGTGTCACGGATCACATTATGATATCTCTGGAAGAATTAGGAAAGGTCCTGCACCA 779
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 865 TGTCCGTGTCACGGATCACATTACGATATATCTGGAAGAATTAGGAAAGGTCCTGCACCA 924
Query 780 TACAACCTGGAAGTACCAACCTACAGCTTCCTGGAAGAGAATAAGTTACTCATTGGTTGA 839
||||||||||||||||| |||||||||||| ||||||||||||| ||||||||||||| |
Sbjct 925 TACAACCTGGAAGTACCGACCTACAGCTTCTTGGAAGAGAATAAATTACTCATTGGTTAA 984
Query 840 TTAATAAAAGCACA 853
| |||||| |||||
Sbjct 985 TGAATAAA-GCACA 997
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42045981039
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5